README
setup.py
/Users/sweaver/Programming/hivtrace/hyphy-python/Link/THyPhy.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/SWIGWrappers/THyPhy_py3.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/contrib/SQLite-3.8.2/shell.c
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/contrib/SQLite-3.8.2/sqlite3.c
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/_hyExecutionContext.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/alignment.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/avllist.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/avllistx.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/avllistxl.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/baseobj.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/batchlan.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/batchlan2.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/batchlanhelpers.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/batchlanruntime.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/calcnode.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/calcnode2.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/category.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/constant.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/error.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/fisher_exact.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/formula.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/fstring.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/likefunc.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/likefunc2.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/likefuncocl.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/list.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/mathobj.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/matrix.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/nexus.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/operation.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/parser.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/parser2.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/polynoml.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/regex.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/sequence.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/simplelist.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/site.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/stack.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/strings.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/trie.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/variable.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/core/variablecontainer.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/gui/preferences.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/new/bayesgraph.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/new/bayesgraph2.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/new/bgm.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/new/bgm2.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/new/scfg.cpp
/Users/sweaver/Programming/hivtrace/hyphy-python/hyphy-src/src/utils/hyphyunixutils.cpp
HyPhy/__init__.py
hyphy_python.egg-info/PKG-INFO
hyphy_python.egg-info/SOURCES.txt
hyphy_python.egg-info/dependency_links.txt
hyphy_python.egg-info/top_level.txt