Metadata-Version: 2.1
Name: methplotlib
Version: 0.1.1
Summary: Plot methylation data obtained from nanopolish
Home-page: https://github.com/wdecoster/methplotlib
Author: Wouter De Coster
Author-email: decosterwouter@gmail.com
License: MIT
Description: # METHPLOTLIB
        
        This script takes data from nanopolish as processed by calculate_methylation_frequency.py to generate a genome browser view on a window.
        
        ## INSTALLATION
        `pip install methplotlib`
        
        ## USAGE
        ```
        methylation_frequency_browser.py [-h] -m METHYLATION [METHYLATION ...]
                                                -n NAMES [NAMES ...] -w WINDOW
                                                [-g GTF]
        
        
        optional arguments:
          -h, --help            show this help message and exit
          -m, --methylation METHYLATION [METHYLATION ...]
                                output of calculate_methylation_frequency.py
          -n, --names NAMES     names of datasets in --methylation
          -w, --window WINDOW   window (region) to which the visualisation has to be restricted e.g. chr7:12345-23456
          -g, --gtf GTF     add annotation based on a gtf file matching to your
                                reference genome
        ```
        
Keywords: nanopore
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Requires-Python: >=3
Description-Content-Type: text/markdown
