MANIFEST.in
setup.py
./base/libsbml_wrap.cpp
./base/sbml/AlgebraicRule.cpp
./base/sbml/AssignmentRule.cpp
./base/sbml/Compartment.cpp
./base/sbml/CompartmentType.cpp
./base/sbml/Constraint.cpp
./base/sbml/Delay.cpp
./base/sbml/Event.cpp
./base/sbml/EventAssignment.cpp
./base/sbml/ExpectedAttributes.cpp
./base/sbml/FunctionDefinition.cpp
./base/sbml/InitialAssignment.cpp
./base/sbml/KineticLaw.cpp
./base/sbml/ListOf.cpp
./base/sbml/LocalParameter.cpp
./base/sbml/Model.cpp
./base/sbml/ModifierSpeciesReference.cpp
./base/sbml/Parameter.cpp
./base/sbml/Priority.cpp
./base/sbml/RateRule.cpp
./base/sbml/Reaction.cpp
./base/sbml/Rule.cpp
./base/sbml/SBMLConstructorException.cpp
./base/sbml/SBMLConvert.cpp
./base/sbml/SBMLDocument.cpp
./base/sbml/SBMLError.cpp
./base/sbml/SBMLErrorLog.cpp
./base/sbml/SBMLNamespaces.cpp
./base/sbml/SBMLReader.cpp
./base/sbml/SBMLTransforms.cpp
./base/sbml/SBMLTypeCodes.cpp
./base/sbml/SBMLVisitor.cpp
./base/sbml/SBMLWriter.cpp
./base/sbml/SBO.cpp
./base/sbml/SBase.cpp
./base/sbml/SimpleSpeciesReference.cpp
./base/sbml/Species.cpp
./base/sbml/SpeciesReference.cpp
./base/sbml/SpeciesType.cpp
./base/sbml/StoichiometryMath.cpp
./base/sbml/SyntaxChecker.cpp
./base/sbml/Trigger.cpp
./base/sbml/Unit.cpp
./base/sbml/UnitDefinition.cpp
./base/sbml/UnitKind.c
./base/sbml/annotation/CVTerm.cpp
./base/sbml/annotation/Date.cpp
./base/sbml/annotation/ModelCreator.cpp
./base/sbml/annotation/ModelHistory.cpp
./base/sbml/annotation/RDFAnnotationParser.cpp
./base/sbml/common/libsbml-version.cpp
./base/sbml/common/operationReturnValues.cpp
./base/sbml/compress/CompressCommon.cpp
./base/sbml/compress/InputDecompressor.cpp
./base/sbml/compress/OutputCompressor.cpp
./base/sbml/compress/bzfstream.cpp
./base/sbml/compress/ioapi.c
./base/sbml/compress/ioapi_mem.c
./base/sbml/compress/iowin32.c
./base/sbml/compress/unzip.c
./base/sbml/compress/zfstream.cpp
./base/sbml/compress/zip.c
./base/sbml/compress/zipfstream.cpp
./base/sbml/conversion/ConversionOption.cpp
./base/sbml/conversion/ConversionProperties.cpp
./base/sbml/conversion/RegisterConverters.cpp
./base/sbml/conversion/SBMLConverter.cpp
./base/sbml/conversion/SBMLConverterRegistry.cpp
./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp
./base/sbml/conversion/SBMLIdConverter.cpp
./base/sbml/conversion/SBMLInferUnitsConverter.cpp
./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp
./base/sbml/conversion/SBMLLevel1Version1Converter.cpp
./base/sbml/conversion/SBMLLevelVersionConverter.cpp
./base/sbml/conversion/SBMLLocalParameterConverter.cpp
./base/sbml/conversion/SBMLRateOfConverter.cpp
./base/sbml/conversion/SBMLReactionConverter.cpp
./base/sbml/conversion/SBMLRuleConverter.cpp
./base/sbml/conversion/SBMLStripPackageConverter.cpp
./base/sbml/conversion/SBMLUnitsConverter.cpp
./base/sbml/extension/ASTBasePlugin.cpp
./base/sbml/extension/ISBMLExtensionNamespaces.cpp
./base/sbml/extension/SBMLDocumentPlugin.cpp
./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp
./base/sbml/extension/SBMLExtension.cpp
./base/sbml/extension/SBMLExtensionException.cpp
./base/sbml/extension/SBMLExtensionNamespaces.cpp
./base/sbml/extension/SBMLExtensionRegistry.cpp
./base/sbml/extension/SBaseExtensionPoint.cpp
./base/sbml/extension/SBasePlugin.cpp
./base/sbml/extension/SBasePluginCreatorBase.cpp
./base/sbml/math/ASTNode.cpp
./base/sbml/math/DefinitionURLRegistry.cpp
./base/sbml/math/FormulaFormatter.cpp
./base/sbml/math/FormulaParser.cpp
./base/sbml/math/FormulaTokenizer.cpp
./base/sbml/math/L3FormulaFormatter.cpp
./base/sbml/math/L3Parser.cpp
./base/sbml/math/L3ParserSettings.cpp
./base/sbml/math/MathML.cpp
./base/sbml/packages/comp/extension/CompExtension.cpp
./base/sbml/packages/comp/extension/CompModelPlugin.cpp
./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp
./base/sbml/packages/comp/extension/CompSBasePlugin.cpp
./base/sbml/packages/comp/sbml/CompBase.cpp
./base/sbml/packages/comp/sbml/Deletion.cpp
./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp
./base/sbml/packages/comp/sbml/ListOfDeletions.cpp
./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp
./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp
./base/sbml/packages/comp/sbml/ListOfPorts.cpp
./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp
./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp
./base/sbml/packages/comp/sbml/ModelDefinition.cpp
./base/sbml/packages/comp/sbml/Port.cpp
./base/sbml/packages/comp/sbml/ReplacedBy.cpp
./base/sbml/packages/comp/sbml/ReplacedElement.cpp
./base/sbml/packages/comp/sbml/Replacing.cpp
./base/sbml/packages/comp/sbml/SBaseRef.cpp
./base/sbml/packages/comp/sbml/Submodel.cpp
./base/sbml/packages/comp/util/CompFlatteningConverter.cpp
./base/sbml/packages/comp/util/SBMLFileResolver.cpp
./base/sbml/packages/comp/util/SBMLResolver.cpp
./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp
./base/sbml/packages/comp/util/SBMLUri.cpp
./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp
./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp
./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp
./base/sbml/packages/comp/validator/CompValidator.cpp
./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp
./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp
./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp
./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp
./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp
./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp
./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp
./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp
./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp
./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp
./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp
./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp
./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp
./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp
./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp
./base/sbml/packages/fbc/extension/FbcExtension.cpp
./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp
./base/sbml/packages/fbc/extension/FbcReactionPlugin.cpp
./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp
./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp
./base/sbml/packages/fbc/sbml/Association.cpp
./base/sbml/packages/fbc/sbml/FbcAnd.cpp
./base/sbml/packages/fbc/sbml/FbcAssociation.cpp
./base/sbml/packages/fbc/sbml/FbcOr.cpp
./base/sbml/packages/fbc/sbml/FluxBound.cpp
./base/sbml/packages/fbc/sbml/FluxObjective.cpp
./base/sbml/packages/fbc/sbml/GeneAssociation.cpp
./base/sbml/packages/fbc/sbml/GeneProduct.cpp
./base/sbml/packages/fbc/sbml/GeneProductAssociation.cpp
./base/sbml/packages/fbc/sbml/GeneProductRef.cpp
./base/sbml/packages/fbc/sbml/Objective.cpp
./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp
./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp
./base/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp
./base/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp
./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp
./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp
./base/sbml/packages/fbc/validator/FbcValidator.cpp
./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp
./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp
./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp
./base/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp
./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp
./base/sbml/packages/groups/extension/GroupsExtension.cpp
./base/sbml/packages/groups/extension/GroupsModelPlugin.cpp
./base/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp
./base/sbml/packages/groups/sbml/Group.cpp
./base/sbml/packages/groups/sbml/ListOfGroups.cpp
./base/sbml/packages/groups/sbml/ListOfMembers.cpp
./base/sbml/packages/groups/sbml/Member.cpp
./base/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp
./base/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp
./base/sbml/packages/groups/validator/GroupsValidator.cpp
./base/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp
./base/sbml/packages/groups/validator/constraints/GroupsConsistencyConstraints.cpp
./base/sbml/packages/groups/validator/constraints/GroupsIdentifierConsistencyConstraints.cpp
./base/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp
./base/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp
./base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp
./base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp
./base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp
./base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp
./base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp
./base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp
./base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp
./base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp
./base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp
./base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp
./base/sbml/packages/layout/extension/LayoutExtension.cpp
./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp
./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp
./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp
./base/sbml/packages/layout/sbml/BoundingBox.cpp
./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp
./base/sbml/packages/layout/sbml/CubicBezier.cpp
./base/sbml/packages/layout/sbml/Curve.cpp
./base/sbml/packages/layout/sbml/Dimensions.cpp
./base/sbml/packages/layout/sbml/GeneralGlyph.cpp
./base/sbml/packages/layout/sbml/GraphicalObject.cpp
./base/sbml/packages/layout/sbml/Layout.cpp
./base/sbml/packages/layout/sbml/LineSegment.cpp
./base/sbml/packages/layout/sbml/Point.cpp
./base/sbml/packages/layout/sbml/ReactionGlyph.cpp
./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp
./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp
./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp
./base/sbml/packages/layout/sbml/TextGlyph.cpp
./base/sbml/packages/layout/util/LayoutAnnotation.cpp
./base/sbml/packages/layout/util/LayoutUtilities.cpp
./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp
./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp
./base/sbml/packages/layout/validator/LayoutValidator.cpp
./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp
./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp
./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp
./base/sbml/packages/multi/extension/MultiASTPlugin.cpp
./base/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp
./base/sbml/packages/multi/extension/MultiExtension.cpp
./base/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp
./base/sbml/packages/multi/extension/MultiModelPlugin.cpp
./base/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp
./base/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp
./base/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp
./base/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp
./base/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp
./base/sbml/packages/multi/sbml/CompartmentReference.cpp
./base/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp
./base/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp
./base/sbml/packages/multi/sbml/MultiSpeciesType.cpp
./base/sbml/packages/multi/sbml/OutwardBindingSite.cpp
./base/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp
./base/sbml/packages/multi/sbml/SpeciesFeature.cpp
./base/sbml/packages/multi/sbml/SpeciesFeatureType.cpp
./base/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp
./base/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp
./base/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp
./base/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp
./base/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp
./base/sbml/packages/multi/validator/MultiConsistencyValidator.cpp
./base/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp
./base/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp
./base/sbml/packages/multi/validator/MultiValidator.cpp
./base/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp
./base/sbml/packages/multi/validator/constraints/MultiIdBase.cpp
./base/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp
./base/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp
./base/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp
./base/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp
./base/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp
./base/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp
./base/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp
./base/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp
./base/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp
./base/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp
./base/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp
./base/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp
./base/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp
./base/sbml/packages/qual/extension/QualExtension.cpp
./base/sbml/packages/qual/extension/QualModelPlugin.cpp
./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp
./base/sbml/packages/qual/sbml/DefaultTerm.cpp
./base/sbml/packages/qual/sbml/FunctionTerm.cpp
./base/sbml/packages/qual/sbml/Input.cpp
./base/sbml/packages/qual/sbml/Output.cpp
./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp
./base/sbml/packages/qual/sbml/Transition.cpp
./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp
./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp
./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp
./base/sbml/packages/qual/validator/QualValidator.cpp
./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp
./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp
./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp
./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp
./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp
./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp
./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp
./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp
./base/sbml/packages/render/extension/RenderExtension.cpp
./base/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp
./base/sbml/packages/render/extension/RenderLayoutPlugin.cpp
./base/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp
./base/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp
./base/sbml/packages/render/sbml/ColorDefinition.cpp
./base/sbml/packages/render/sbml/DefaultValues.cpp
./base/sbml/packages/render/sbml/Ellipse.cpp
./base/sbml/packages/render/sbml/GlobalRenderInformation.cpp
./base/sbml/packages/render/sbml/GlobalStyle.cpp
./base/sbml/packages/render/sbml/GradientBase.cpp
./base/sbml/packages/render/sbml/GradientStop.cpp
./base/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp
./base/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp
./base/sbml/packages/render/sbml/Image.cpp
./base/sbml/packages/render/sbml/LineEnding.cpp
./base/sbml/packages/render/sbml/LinearGradient.cpp
./base/sbml/packages/render/sbml/ListOfColorDefinitions.cpp
./base/sbml/packages/render/sbml/ListOfCurveElements.cpp
./base/sbml/packages/render/sbml/ListOfDrawables.cpp
./base/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp
./base/sbml/packages/render/sbml/ListOfGlobalStyles.cpp
./base/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp
./base/sbml/packages/render/sbml/ListOfGradientStops.cpp
./base/sbml/packages/render/sbml/ListOfLineEndings.cpp
./base/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp
./base/sbml/packages/render/sbml/ListOfLocalStyles.cpp
./base/sbml/packages/render/sbml/LocalRenderInformation.cpp
./base/sbml/packages/render/sbml/LocalStyle.cpp
./base/sbml/packages/render/sbml/Polygon.cpp
./base/sbml/packages/render/sbml/RadialGradient.cpp
./base/sbml/packages/render/sbml/Rectangle.cpp
./base/sbml/packages/render/sbml/RelAbsVector.cpp
./base/sbml/packages/render/sbml/RenderCubicBezier.cpp
./base/sbml/packages/render/sbml/RenderCurve.cpp
./base/sbml/packages/render/sbml/RenderGroup.cpp
./base/sbml/packages/render/sbml/RenderInformationBase.cpp
./base/sbml/packages/render/sbml/RenderPoint.cpp
./base/sbml/packages/render/sbml/Style.cpp
./base/sbml/packages/render/sbml/Text.cpp
./base/sbml/packages/render/sbml/Transformation.cpp
./base/sbml/packages/render/sbml/Transformation2D.cpp
./base/sbml/packages/render/util/RenderLayoutConverter.cpp
./base/sbml/packages/render/util/RenderUtilities.cpp
./base/sbml/packages/render/validator/RenderConsistencyValidator.cpp
./base/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp
./base/sbml/packages/render/validator/RenderValidator.cpp
./base/sbml/packages/render/validator/constraints/RenderConsistencyConstraints.cpp
./base/sbml/packages/render/validator/constraints/RenderIdentifierConsistencyConstraints.cpp
./base/sbml/units/FormulaUnitsData.cpp
./base/sbml/units/UnitFormulaFormatter.cpp
./base/sbml/units/UnitKindList.cpp
./base/sbml/util/CallbackRegistry.cpp
./base/sbml/util/ElementFilter.cpp
./base/sbml/util/IdFilter.cpp
./base/sbml/util/IdList.cpp
./base/sbml/util/IdentifierTransformer.cpp
./base/sbml/util/List.cpp
./base/sbml/util/MathFilter.cpp
./base/sbml/util/MetaIdFilter.cpp
./base/sbml/util/PrefixTransformer.cpp
./base/sbml/util/Stack.c
./base/sbml/util/StringBuffer.c
./base/sbml/util/memory.c
./base/sbml/util/util.cpp
./base/sbml/validator/ConsistencyValidator.cpp
./base/sbml/validator/IdentifierConsistencyValidator.cpp
./base/sbml/validator/InternalConsistencyValidator.cpp
./base/sbml/validator/L1CompatibilityValidator.cpp
./base/sbml/validator/L2v1CompatibilityValidator.cpp
./base/sbml/validator/L2v2CompatibilityValidator.cpp
./base/sbml/validator/L2v3CompatibilityValidator.cpp
./base/sbml/validator/L2v4CompatibilityValidator.cpp
./base/sbml/validator/L3v1CompatibilityValidator.cpp
./base/sbml/validator/L3v2CompatibilityValidator.cpp
./base/sbml/validator/MathMLConsistencyValidator.cpp
./base/sbml/validator/ModelingPracticeValidator.cpp
./base/sbml/validator/OverdeterminedValidator.cpp
./base/sbml/validator/SBMLExternalValidator.cpp
./base/sbml/validator/SBMLInternalValidator.cpp
./base/sbml/validator/SBMLValidator.cpp
./base/sbml/validator/SBOConsistencyValidator.cpp
./base/sbml/validator/StrictUnitConsistencyValidator.cpp
./base/sbml/validator/UnitConsistencyValidator.cpp
./base/sbml/validator/VConstraint.cpp
./base/sbml/validator/Validator.cpp
./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp
./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp
./base/sbml/validator/constraints/AssignmentCycles.cpp
./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp
./base/sbml/validator/constraints/CiElementMathCheck.cpp
./base/sbml/validator/constraints/CiElementNot0DComp.cpp
./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp
./base/sbml/validator/constraints/ConsistencyConstraints.cpp
./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp
./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp
./base/sbml/validator/constraints/ExponentUnitsCheck.cpp
./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp
./base/sbml/validator/constraints/FunctionDefinitionRecursion.cpp
./base/sbml/validator/constraints/FunctionDefinitionVars.cpp
./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp
./base/sbml/validator/constraints/FunctionReferredToExists.cpp
./base/sbml/validator/constraints/IdBase.cpp
./base/sbml/validator/constraints/IdNameNewOnSBase.cpp
./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp
./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp
./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp
./base/sbml/validator/constraints/KineticLawVars.cpp
./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp
./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp
./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp
./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp
./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp
./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp
./base/sbml/validator/constraints/L3v2CompatibilityConstraints.cpp
./base/sbml/validator/constraints/LambdaMathCheck.cpp
./base/sbml/validator/constraints/LocalParameterMathCheck.cpp
./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp
./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp
./base/sbml/validator/constraints/MathMLBase.cpp
./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp
./base/sbml/validator/constraints/ModelUnitsDangling.cpp
./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp
./base/sbml/validator/constraints/NumberArgsMathCheck.cpp
./base/sbml/validator/constraints/NumericArgsMathCheck.cpp
./base/sbml/validator/constraints/NumericReturnMathCheck.cpp
./base/sbml/validator/constraints/OverDeterminedCheck.cpp
./base/sbml/validator/constraints/OverdeterminedConstraints.cpp
./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp
./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp
./base/sbml/validator/constraints/PowerUnitsCheck.cpp
./base/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp
./base/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp
./base/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp
./base/sbml/validator/constraints/RateOfCycles.cpp
./base/sbml/validator/constraints/ReportEmptyListOf.cpp
./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp
./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp
./base/sbml/validator/constraints/StoichiometryMathVars.cpp
./base/sbml/validator/constraints/StrictUnitConsistencyConstraints.cpp
./base/sbml/validator/constraints/UniqueIdBase.cpp
./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp
./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp
./base/sbml/validator/constraints/UniqueIdsInModel.cpp
./base/sbml/validator/constraints/UniqueMetaId.cpp
./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp
./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp
./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp
./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp
./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp
./base/sbml/validator/constraints/UniqueVarsInRules.cpp
./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp
./base/sbml/validator/constraints/UnitsBase.cpp
./base/sbml/validator/constraints/ValidCnUnitsValue.cpp
./base/sbml/xml/LibXMLAttributes.cpp
./base/sbml/xml/LibXMLHandler.cpp
./base/sbml/xml/LibXMLNamespaces.cpp
./base/sbml/xml/LibXMLParser.cpp
./base/sbml/xml/LibXMLTranscode.cpp
./base/sbml/xml/XMLAttributes.cpp
./base/sbml/xml/XMLBuffer.cpp
./base/sbml/xml/XMLConstructorException.cpp
./base/sbml/xml/XMLError.cpp
./base/sbml/xml/XMLErrorLog.cpp
./base/sbml/xml/XMLFileBuffer.cpp
./base/sbml/xml/XMLHandler.cpp
./base/sbml/xml/XMLInputStream.cpp
./base/sbml/xml/XMLLogOverride.cpp
./base/sbml/xml/XMLMemoryBuffer.cpp
./base/sbml/xml/XMLNamespaces.cpp
./base/sbml/xml/XMLNode.cpp
./base/sbml/xml/XMLOutputStream.cpp
./base/sbml/xml/XMLParser.cpp
./base/sbml/xml/XMLToken.cpp
./base/sbml/xml/XMLTokenizer.cpp
./base/sbml/xml/XMLTriple.cpp
base/ListWrapper.h
base/OStream.cpp
base/OStream.h
base/comp-package.h
base/fbc-package.h
base/groups-package.h
base/l3v2extendedmath-package.h
base/layout-package.h
base/libsbml-packages.h
base/libsbml.h
base/libsbml_wrap.cpp
base/libsbml_wrap.h
base/local-downcast-astplugins-l3v2extendedmath.cpp
base/local-downcast-astplugins-multi.cpp
base/local-downcast-astplugins.cpp
base/local-downcast-converters-comp.cpp
base/local-downcast-converters-fbc.cpp
base/local-downcast-converters-layout.cpp
base/local-downcast-converters-qual.cpp
base/local-downcast-converters.cpp
base/local-downcast-extension-comp.cpp
base/local-downcast-extension-fbc.cpp
base/local-downcast-extension-groups.cpp
base/local-downcast-extension-l3v2extendedmath.cpp
base/local-downcast-extension-layout.cpp
base/local-downcast-extension-multi.cpp
base/local-downcast-extension-qual.cpp
base/local-downcast-extension-render.cpp
base/local-downcast-extension.cpp
base/local-downcast-namespaces-comp.cpp
base/local-downcast-namespaces-fbc.cpp
base/local-downcast-namespaces-groups.cpp
base/local-downcast-namespaces-l3v2extendedmath.cpp
base/local-downcast-namespaces-layout.cpp
base/local-downcast-namespaces-multi.cpp
base/local-downcast-namespaces-qual.cpp
base/local-downcast-namespaces-render.cpp
base/local-downcast-namespaces.cpp
base/local-downcast-packages-comp.cpp
base/local-downcast-packages-fbc.cpp
base/local-downcast-packages-groups.cpp
base/local-downcast-packages-l3v2extendedmath.cpp
base/local-downcast-packages-layout.cpp
base/local-downcast-packages-multi.cpp
base/local-downcast-packages-qual.cpp
base/local-downcast-packages-render.cpp
base/local-downcast-plugins-comp.cpp
base/local-downcast-plugins-fbc.cpp
base/local-downcast-plugins-groups.cpp
base/local-downcast-plugins-l3v2extendedmath.cpp
base/local-downcast-plugins-layout.cpp
base/local-downcast-plugins-multi.cpp
base/local-downcast-plugins-qual.cpp
base/local-downcast-plugins-render.cpp
base/local-downcast-plugins.cpp
base/local-downcast.cpp
base/local.cpp
base/multi-package.h
base/qual-package.h
base/render-package.h
base/sbml/AlgebraicRule.cpp
base/sbml/AlgebraicRule.h
base/sbml/AssignmentRule.cpp
base/sbml/AssignmentRule.h
base/sbml/Compartment.cpp
base/sbml/Compartment.h
base/sbml/CompartmentType.cpp
base/sbml/CompartmentType.h
base/sbml/Constraint.cpp
base/sbml/Constraint.h
base/sbml/Delay.cpp
base/sbml/Delay.h
base/sbml/Event.cpp
base/sbml/Event.h
base/sbml/EventAssignment.cpp
base/sbml/EventAssignment.h
base/sbml/ExpectedAttributes.cpp
base/sbml/ExpectedAttributes.h
base/sbml/FunctionDefinition.cpp
base/sbml/FunctionDefinition.h
base/sbml/InitialAssignment.cpp
base/sbml/InitialAssignment.h
base/sbml/KineticLaw.cpp
base/sbml/KineticLaw.h
base/sbml/ListOf.cpp
base/sbml/ListOf.h
base/sbml/LocalParameter.cpp
base/sbml/LocalParameter.h
base/sbml/Model.cpp
base/sbml/Model.h
base/sbml/ModifierSpeciesReference.cpp
base/sbml/ModifierSpeciesReference.h
base/sbml/Parameter.cpp
base/sbml/Parameter.h
base/sbml/Priority.cpp
base/sbml/Priority.h
base/sbml/RateRule.cpp
base/sbml/RateRule.h
base/sbml/Reaction.cpp
base/sbml/Reaction.h
base/sbml/Rule.cpp
base/sbml/Rule.h
base/sbml/SBMLConstructorException.cpp
base/sbml/SBMLConstructorException.h
base/sbml/SBMLConvert.cpp
base/sbml/SBMLDocument.cpp
base/sbml/SBMLDocument.h
base/sbml/SBMLError.cpp
base/sbml/SBMLError.h
base/sbml/SBMLErrorLog.cpp
base/sbml/SBMLErrorLog.h
base/sbml/SBMLErrorTable.h
base/sbml/SBMLNamespaces.cpp
base/sbml/SBMLNamespaces.h
base/sbml/SBMLReader.cpp
base/sbml/SBMLReader.h
base/sbml/SBMLTransforms.cpp
base/sbml/SBMLTransforms.h
base/sbml/SBMLTypeCodes.cpp
base/sbml/SBMLTypeCodes.h
base/sbml/SBMLTypes.h
base/sbml/SBMLVisitor.cpp
base/sbml/SBMLVisitor.h
base/sbml/SBMLWriter.cpp
base/sbml/SBMLWriter.h
base/sbml/SBO.cpp
base/sbml/SBO.h
base/sbml/SBase.cpp
base/sbml/SBase.h
base/sbml/SimpleSpeciesReference.cpp
base/sbml/SimpleSpeciesReference.h
base/sbml/Species.cpp
base/sbml/Species.h
base/sbml/SpeciesReference.cpp
base/sbml/SpeciesReference.h
base/sbml/SpeciesType.cpp
base/sbml/SpeciesType.h
base/sbml/StoichiometryMath.cpp
base/sbml/StoichiometryMath.h
base/sbml/SyntaxChecker.cpp
base/sbml/SyntaxChecker.h
base/sbml/Trigger.cpp
base/sbml/Trigger.h
base/sbml/Unit.cpp
base/sbml/Unit.h
base/sbml/UnitDefinition.cpp
base/sbml/UnitDefinition.h
base/sbml/UnitKind.h
base/sbml/annotation/CVTerm.cpp
base/sbml/annotation/CVTerm.h
base/sbml/annotation/Date.cpp
base/sbml/annotation/Date.h
base/sbml/annotation/ModelCreator.cpp
base/sbml/annotation/ModelCreator.h
base/sbml/annotation/ModelHistory.cpp
base/sbml/annotation/ModelHistory.h
base/sbml/annotation/RDFAnnotation.h
base/sbml/annotation/RDFAnnotationParser.cpp
base/sbml/annotation/RDFAnnotationParser.h
base/sbml/common/common-documentation.h
base/sbml/common/common-sbmlerror-codes.h
base/sbml/common/common.h
base/sbml/common/extern.h
base/sbml/common/libsbml-config-common.h
base/sbml/common/libsbml-config-packages.h
base/sbml/common/libsbml-config.h
base/sbml/common/libsbml-namespace.h
base/sbml/common/libsbml-package.h
base/sbml/common/libsbml-version.cpp
base/sbml/common/libsbml-version.h
base/sbml/common/operationReturnValues.cpp
base/sbml/common/operationReturnValues.h
base/sbml/common/sbmlfwd.h
base/sbml/compress/CompressCommon.cpp
base/sbml/compress/CompressCommon.h
base/sbml/compress/InputDecompressor.cpp
base/sbml/compress/InputDecompressor.h
base/sbml/compress/OutputCompressor.cpp
base/sbml/compress/OutputCompressor.h
base/sbml/compress/bzfstream.cpp
base/sbml/compress/bzfstream.h
base/sbml/compress/crypt.h
base/sbml/compress/ioapi.h
base/sbml/compress/ioapi_mem.h
base/sbml/compress/iowin32.h
base/sbml/compress/unzip.h
base/sbml/compress/zfstream.cpp
base/sbml/compress/zfstream.h
base/sbml/compress/zip.h
base/sbml/compress/zipfstream.cpp
base/sbml/compress/zipfstream.h
base/sbml/conversion/ConversionOption.cpp
base/sbml/conversion/ConversionOption.h
base/sbml/conversion/ConversionProperties.cpp
base/sbml/conversion/ConversionProperties.h
base/sbml/conversion/RegisterConverters.cpp
base/sbml/conversion/SBMLConverter.cpp
base/sbml/conversion/SBMLConverter.h
base/sbml/conversion/SBMLConverterRegister.h
base/sbml/conversion/SBMLConverterRegistry.cpp
base/sbml/conversion/SBMLConverterRegistry.h
base/sbml/conversion/SBMLConverterTypes.h
base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp
base/sbml/conversion/SBMLFunctionDefinitionConverter.h
base/sbml/conversion/SBMLIdConverter.cpp
base/sbml/conversion/SBMLIdConverter.h
base/sbml/conversion/SBMLInferUnitsConverter.cpp
base/sbml/conversion/SBMLInferUnitsConverter.h
base/sbml/conversion/SBMLInitialAssignmentConverter.cpp
base/sbml/conversion/SBMLInitialAssignmentConverter.h
base/sbml/conversion/SBMLLevel1Version1Converter.cpp
base/sbml/conversion/SBMLLevel1Version1Converter.h
base/sbml/conversion/SBMLLevelVersionConverter.cpp
base/sbml/conversion/SBMLLevelVersionConverter.h
base/sbml/conversion/SBMLLocalParameterConverter.cpp
base/sbml/conversion/SBMLLocalParameterConverter.h
base/sbml/conversion/SBMLRateOfConverter.cpp
base/sbml/conversion/SBMLRateOfConverter.h
base/sbml/conversion/SBMLReactionConverter.cpp
base/sbml/conversion/SBMLReactionConverter.h
base/sbml/conversion/SBMLRuleConverter.cpp
base/sbml/conversion/SBMLRuleConverter.h
base/sbml/conversion/SBMLStripPackageConverter.cpp
base/sbml/conversion/SBMLStripPackageConverter.h
base/sbml/conversion/SBMLUnitsConverter.cpp
base/sbml/conversion/SBMLUnitsConverter.h
base/sbml/extension/ASTBasePlugin.cpp
base/sbml/extension/ASTBasePlugin.h
base/sbml/extension/ISBMLExtensionNamespaces.cpp
base/sbml/extension/ISBMLExtensionNamespaces.h
base/sbml/extension/RegisterExtensions.cxx
base/sbml/extension/RegisterExtensions.h
base/sbml/extension/SBMLDocumentPlugin.cpp
base/sbml/extension/SBMLDocumentPlugin.h
base/sbml/extension/SBMLDocumentPluginNotRequired.cpp
base/sbml/extension/SBMLDocumentPluginNotRequired.h
base/sbml/extension/SBMLExtension.cpp
base/sbml/extension/SBMLExtension.h
base/sbml/extension/SBMLExtensionException.cpp
base/sbml/extension/SBMLExtensionException.h
base/sbml/extension/SBMLExtensionNamespaces.cpp
base/sbml/extension/SBMLExtensionNamespaces.h
base/sbml/extension/SBMLExtensionRegister.h
base/sbml/extension/SBMLExtensionRegistry.cpp
base/sbml/extension/SBMLExtensionRegistry.h
base/sbml/extension/SBaseExtensionPoint.cpp
base/sbml/extension/SBaseExtensionPoint.h
base/sbml/extension/SBasePlugin.cpp
base/sbml/extension/SBasePlugin.h
base/sbml/extension/SBasePluginCreator.h
base/sbml/extension/SBasePluginCreatorBase.cpp
base/sbml/extension/SBasePluginCreatorBase.h
base/sbml/math/ASTNode.cpp
base/sbml/math/ASTNode.h
base/sbml/math/ASTNodeType.h
base/sbml/math/DefinitionURLRegistry.cpp
base/sbml/math/DefinitionURLRegistry.h
base/sbml/math/FormulaFormatter.cpp
base/sbml/math/FormulaFormatter.h
base/sbml/math/FormulaParser.cpp
base/sbml/math/FormulaParser.h
base/sbml/math/FormulaTokenizer.cpp
base/sbml/math/FormulaTokenizer.h
base/sbml/math/L3FormulaFormatter.cpp
base/sbml/math/L3FormulaFormatter.h
base/sbml/math/L3Parser.cpp
base/sbml/math/L3Parser.h
base/sbml/math/L3ParserSettings.cpp
base/sbml/math/L3ParserSettings.h
base/sbml/math/MathML.cpp
base/sbml/math/MathML.h
base/sbml/packages/comp-register.cxx
base/sbml/packages/comp-register.h
base/sbml/packages/fbc-register.cxx
base/sbml/packages/fbc-register.h
base/sbml/packages/groups-register.cxx
base/sbml/packages/groups-register.h
base/sbml/packages/l3v2extendedmath-register.cxx
base/sbml/packages/l3v2extendedmath-register.h
base/sbml/packages/layout-register.cxx
base/sbml/packages/layout-register.h
base/sbml/packages/multi-register.cxx
base/sbml/packages/multi-register.h
base/sbml/packages/qual-register.cxx
base/sbml/packages/qual-register.h
base/sbml/packages/render-register.cxx
base/sbml/packages/render-register.h
base/sbml/packages/comp/common/CompExtensionTypes.h
base/sbml/packages/comp/common/compfwd.h
base/sbml/packages/comp/extension/CompExtension.cpp
base/sbml/packages/comp/extension/CompExtension.h
base/sbml/packages/comp/extension/CompModelPlugin.cpp
base/sbml/packages/comp/extension/CompModelPlugin.h
base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp
base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h
base/sbml/packages/comp/extension/CompSBasePlugin.cpp
base/sbml/packages/comp/extension/CompSBasePlugin.h
base/sbml/packages/comp/sbml/CompBase.cpp
base/sbml/packages/comp/sbml/CompBase.h
base/sbml/packages/comp/sbml/Deletion.cpp
base/sbml/packages/comp/sbml/Deletion.h
base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp
base/sbml/packages/comp/sbml/ExternalModelDefinition.h
base/sbml/packages/comp/sbml/ListOfDeletions.cpp
base/sbml/packages/comp/sbml/ListOfDeletions.h
base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp
base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h
base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp
base/sbml/packages/comp/sbml/ListOfModelDefinitions.h
base/sbml/packages/comp/sbml/ListOfPorts.cpp
base/sbml/packages/comp/sbml/ListOfPorts.h
base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp
base/sbml/packages/comp/sbml/ListOfReplacedElements.h
base/sbml/packages/comp/sbml/ListOfSubmodels.cpp
base/sbml/packages/comp/sbml/ListOfSubmodels.h
base/sbml/packages/comp/sbml/ModelDefinition.cpp
base/sbml/packages/comp/sbml/ModelDefinition.h
base/sbml/packages/comp/sbml/Port.cpp
base/sbml/packages/comp/sbml/Port.h
base/sbml/packages/comp/sbml/ReplacedBy.cpp
base/sbml/packages/comp/sbml/ReplacedBy.h
base/sbml/packages/comp/sbml/ReplacedElement.cpp
base/sbml/packages/comp/sbml/ReplacedElement.h
base/sbml/packages/comp/sbml/Replacing.cpp
base/sbml/packages/comp/sbml/Replacing.h
base/sbml/packages/comp/sbml/SBaseRef.cpp
base/sbml/packages/comp/sbml/SBaseRef.h
base/sbml/packages/comp/sbml/Submodel.cpp
base/sbml/packages/comp/sbml/Submodel.h
base/sbml/packages/comp/util/CompFlatteningConverter.cpp
base/sbml/packages/comp/util/CompFlatteningConverter.h
base/sbml/packages/comp/util/SBMLFileResolver.cpp
base/sbml/packages/comp/util/SBMLFileResolver.h
base/sbml/packages/comp/util/SBMLResolver.cpp
base/sbml/packages/comp/util/SBMLResolver.h
base/sbml/packages/comp/util/SBMLResolverRegistry.cpp
base/sbml/packages/comp/util/SBMLResolverRegistry.h
base/sbml/packages/comp/util/SBMLUri.cpp
base/sbml/packages/comp/util/SBMLUri.h
base/sbml/packages/comp/validator/CompConsistencyValidator.cpp
base/sbml/packages/comp/validator/CompConsistencyValidator.h
base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp
base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h
base/sbml/packages/comp/validator/CompSBMLError.h
base/sbml/packages/comp/validator/CompSBMLErrorTable.h
base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp
base/sbml/packages/comp/validator/CompUnitConsistencyValidator.h
base/sbml/packages/comp/validator/CompValidator.cpp
base/sbml/packages/comp/validator/CompValidator.h
base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp
base/sbml/packages/comp/validator/constraints/ClassReplacements.h
base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp
base/sbml/packages/comp/validator/constraints/CompConsistencyConstraintsDeclared.cxx
base/sbml/packages/comp/validator/constraints/CompIdBase.cpp
base/sbml/packages/comp/validator/constraints/CompIdBase.h
base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp
base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraintsDeclared.cxx
base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp
base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraintsDeclared.cxx
base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp
base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.h
base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp
base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.h
base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp
base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.h
base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp
base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h
base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp
base/sbml/packages/comp/validator/constraints/UniqueComponentIds.h
base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp
base/sbml/packages/comp/validator/constraints/UniqueModelIds.h
base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp
base/sbml/packages/comp/validator/constraints/UniquePortIds.h
base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp
base/sbml/packages/comp/validator/constraints/UniquePortReferences.h
base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp
base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.h
base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp
base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.h
base/sbml/packages/fbc/common/FbcExtensionTypes.h
base/sbml/packages/fbc/common/fbcfwd.h
base/sbml/packages/fbc/extension/FbcExtension.cpp
base/sbml/packages/fbc/extension/FbcExtension.h
base/sbml/packages/fbc/extension/FbcModelPlugin.cpp
base/sbml/packages/fbc/extension/FbcModelPlugin.h
base/sbml/packages/fbc/extension/FbcReactionPlugin.cpp
base/sbml/packages/fbc/extension/FbcReactionPlugin.h
base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp
base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h
base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp
base/sbml/packages/fbc/extension/FbcSpeciesPlugin.h
base/sbml/packages/fbc/sbml/Association.cpp
base/sbml/packages/fbc/sbml/Association.h
base/sbml/packages/fbc/sbml/FbcAnd.cpp
base/sbml/packages/fbc/sbml/FbcAnd.h
base/sbml/packages/fbc/sbml/FbcAssociation.cpp
base/sbml/packages/fbc/sbml/FbcAssociation.h
base/sbml/packages/fbc/sbml/FbcOr.cpp
base/sbml/packages/fbc/sbml/FbcOr.h
base/sbml/packages/fbc/sbml/FluxBound.cpp
base/sbml/packages/fbc/sbml/FluxBound.h
base/sbml/packages/fbc/sbml/FluxObjective.cpp
base/sbml/packages/fbc/sbml/FluxObjective.h
base/sbml/packages/fbc/sbml/GeneAssociation.cpp
base/sbml/packages/fbc/sbml/GeneAssociation.h
base/sbml/packages/fbc/sbml/GeneProduct.cpp
base/sbml/packages/fbc/sbml/GeneProduct.h
base/sbml/packages/fbc/sbml/GeneProductAssociation.cpp
base/sbml/packages/fbc/sbml/GeneProductAssociation.h
base/sbml/packages/fbc/sbml/GeneProductRef.cpp
base/sbml/packages/fbc/sbml/GeneProductRef.h
base/sbml/packages/fbc/sbml/Objective.cpp
base/sbml/packages/fbc/sbml/Objective.h
base/sbml/packages/fbc/util/CobraToFbcConverter.cpp
base/sbml/packages/fbc/util/CobraToFbcConverter.h
base/sbml/packages/fbc/util/FbcToCobraConverter.cpp
base/sbml/packages/fbc/util/FbcToCobraConverter.h
base/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp
base/sbml/packages/fbc/util/FbcV1ToV2Converter.h
base/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp
base/sbml/packages/fbc/util/FbcV2ToV1Converter.h
base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp
base/sbml/packages/fbc/validator/FbcConsistencyValidator.h
base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp
base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h
base/sbml/packages/fbc/validator/FbcSBMLError.h
base/sbml/packages/fbc/validator/FbcSBMLErrorTable.h
base/sbml/packages/fbc/validator/FbcValidator.cpp
base/sbml/packages/fbc/validator/FbcValidator.h
base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp
base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraintsDeclared.cxx
base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp
base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraintsDeclared.cxx
base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp
base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.h
base/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp
base/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.h
base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp
base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h
base/sbml/packages/groups/common/GroupsExtensionTypes.h
base/sbml/packages/groups/common/groupsfwd.h
base/sbml/packages/groups/extension/GroupsExtension.cpp
base/sbml/packages/groups/extension/GroupsExtension.h
base/sbml/packages/groups/extension/GroupsModelPlugin.cpp
base/sbml/packages/groups/extension/GroupsModelPlugin.h
base/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp
base/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.h
base/sbml/packages/groups/sbml/Group.cpp
base/sbml/packages/groups/sbml/Group.h
base/sbml/packages/groups/sbml/ListOfGroups.cpp
base/sbml/packages/groups/sbml/ListOfGroups.h
base/sbml/packages/groups/sbml/ListOfMembers.cpp
base/sbml/packages/groups/sbml/ListOfMembers.h
base/sbml/packages/groups/sbml/Member.cpp
base/sbml/packages/groups/sbml/Member.h
base/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp
base/sbml/packages/groups/validator/GroupsConsistencyValidator.h
base/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp
base/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.h
base/sbml/packages/groups/validator/GroupsSBMLError.h
base/sbml/packages/groups/validator/GroupsSBMLErrorTable.h
base/sbml/packages/groups/validator/GroupsValidator.cpp
base/sbml/packages/groups/validator/GroupsValidator.h
base/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp
base/sbml/packages/groups/validator/constraints/GroupCircularReferences.h
base/sbml/packages/groups/validator/constraints/GroupsConsistencyConstraints.cpp
base/sbml/packages/groups/validator/constraints/GroupsConsistencyConstraintsDeclared.cxx
base/sbml/packages/groups/validator/constraints/GroupsIdentifierConsistencyConstraints.cpp
base/sbml/packages/groups/validator/constraints/GroupsIdentifierConsistencyConstraintsDeclared.cxx
base/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp
base/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.h
base/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp
base/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.h
base/sbml/packages/l3v2extendedmath/common/L3v2extendedmathExtensionTypes.h
base/sbml/packages/l3v2extendedmath/common/l3v2extendedmathfwd.h
base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp
base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h
base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp
base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.h
base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp
base/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h
base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp
base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.h
base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLError.h
base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathSBMLErrorTable.h
base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp
base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.h
base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp
base/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h
base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp
base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.h
base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp
base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.h
base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp
base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraintsDeclared.cxx
base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp
base/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraintsDeclared.cxx
base/sbml/packages/layout/common/LayoutExtensionTypes.h
base/sbml/packages/layout/common/layoutfwd.h
base/sbml/packages/layout/extension/LayoutExtension.cpp
base/sbml/packages/layout/extension/LayoutExtension.h
base/sbml/packages/layout/extension/LayoutModelPlugin.cpp
base/sbml/packages/layout/extension/LayoutModelPlugin.h
base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp
base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h
base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp
base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h
base/sbml/packages/layout/sbml/BoundingBox.cpp
base/sbml/packages/layout/sbml/BoundingBox.h
base/sbml/packages/layout/sbml/CompartmentGlyph.cpp
base/sbml/packages/layout/sbml/CompartmentGlyph.h
base/sbml/packages/layout/sbml/CubicBezier.cpp
base/sbml/packages/layout/sbml/CubicBezier.h
base/sbml/packages/layout/sbml/Curve.cpp
base/sbml/packages/layout/sbml/Curve.h
base/sbml/packages/layout/sbml/Dimensions.cpp
base/sbml/packages/layout/sbml/Dimensions.h
base/sbml/packages/layout/sbml/GeneralGlyph.cpp
base/sbml/packages/layout/sbml/GeneralGlyph.h
base/sbml/packages/layout/sbml/GraphicalObject.cpp
base/sbml/packages/layout/sbml/GraphicalObject.h
base/sbml/packages/layout/sbml/Layout.cpp
base/sbml/packages/layout/sbml/Layout.h
base/sbml/packages/layout/sbml/LineSegment.cpp
base/sbml/packages/layout/sbml/LineSegment.h
base/sbml/packages/layout/sbml/Point.cpp
base/sbml/packages/layout/sbml/Point.h
base/sbml/packages/layout/sbml/ReactionGlyph.cpp
base/sbml/packages/layout/sbml/ReactionGlyph.h
base/sbml/packages/layout/sbml/ReferenceGlyph.cpp
base/sbml/packages/layout/sbml/ReferenceGlyph.h
base/sbml/packages/layout/sbml/SpeciesGlyph.cpp
base/sbml/packages/layout/sbml/SpeciesGlyph.h
base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp
base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h
base/sbml/packages/layout/sbml/SpeciesReferenceRole.h
base/sbml/packages/layout/sbml/TextGlyph.cpp
base/sbml/packages/layout/sbml/TextGlyph.h
base/sbml/packages/layout/util/LayoutAnnotation.cpp
base/sbml/packages/layout/util/LayoutAnnotation.h
base/sbml/packages/layout/util/LayoutUtilities.cpp
base/sbml/packages/layout/util/LayoutUtilities.h
base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp
base/sbml/packages/layout/validator/LayoutConsistencyValidator.h
base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp
base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h
base/sbml/packages/layout/validator/LayoutSBMLError.h
base/sbml/packages/layout/validator/LayoutSBMLErrorTable.h
base/sbml/packages/layout/validator/LayoutValidator.cpp
base/sbml/packages/layout/validator/LayoutValidator.h
base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp
base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraintsDeclared.cxx
base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp
base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraintsDeclared.cxx
base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp
base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h
base/sbml/packages/multi/common/MultiExtensionTypes.h
base/sbml/packages/multi/common/multifwd.h
base/sbml/packages/multi/extension/MultiASTPlugin.cpp
base/sbml/packages/multi/extension/MultiASTPlugin.h
base/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp
base/sbml/packages/multi/extension/MultiCompartmentPlugin.h
base/sbml/packages/multi/extension/MultiExtension.cpp
base/sbml/packages/multi/extension/MultiExtension.h
base/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp
base/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h
base/sbml/packages/multi/extension/MultiModelPlugin.cpp
base/sbml/packages/multi/extension/MultiModelPlugin.h
base/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp
base/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.h
base/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp
base/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h
base/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp
base/sbml/packages/multi/extension/MultiSpeciesPlugin.h
base/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp
base/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h
base/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp
base/sbml/packages/multi/sbml/BindingSiteSpeciesType.h
base/sbml/packages/multi/sbml/CompartmentReference.cpp
base/sbml/packages/multi/sbml/CompartmentReference.h
base/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp
base/sbml/packages/multi/sbml/InSpeciesTypeBond.h
base/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp
base/sbml/packages/multi/sbml/IntraSpeciesReaction.h
base/sbml/packages/multi/sbml/MultiSpeciesType.cpp
base/sbml/packages/multi/sbml/MultiSpeciesType.h
base/sbml/packages/multi/sbml/OutwardBindingSite.cpp
base/sbml/packages/multi/sbml/OutwardBindingSite.h
base/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp
base/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h
base/sbml/packages/multi/sbml/SpeciesFeature.cpp
base/sbml/packages/multi/sbml/SpeciesFeature.h
base/sbml/packages/multi/sbml/SpeciesFeatureType.cpp
base/sbml/packages/multi/sbml/SpeciesFeatureType.h
base/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp
base/sbml/packages/multi/sbml/SpeciesFeatureValue.h
base/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp
base/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h
base/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp
base/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h
base/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp
base/sbml/packages/multi/sbml/SpeciesTypeInstance.h
base/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp
base/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h
base/sbml/packages/multi/validator/MultiConsistencyValidator.cpp
base/sbml/packages/multi/validator/MultiConsistencyValidator.h
base/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp
base/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.h
base/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp
base/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.h
base/sbml/packages/multi/validator/MultiSBMLError.h
base/sbml/packages/multi/validator/MultiSBMLErrorTable.h
base/sbml/packages/multi/validator/MultiValidator.cpp
base/sbml/packages/multi/validator/MultiValidator.h
base/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp
base/sbml/packages/multi/validator/constraints/MultiConsistencyConstraintsDeclared.cxx
base/sbml/packages/multi/validator/constraints/MultiIdBase.cpp
base/sbml/packages/multi/validator/constraints/MultiIdBase.h
base/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp
base/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraintsDeclared.cxx
base/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp
base/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.h
base/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp
base/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.h
base/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp
base/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraintsDeclared.cxx
base/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp
base/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.h
base/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp
base/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.h
base/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp
base/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.h
base/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp
base/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.h
base/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp
base/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.h
base/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp
base/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.h
base/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp
base/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.h
base/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp
base/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.h
base/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp
base/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.h
base/sbml/packages/qual/common/QualExtensionTypes.h
base/sbml/packages/qual/common/qualfwd.h
base/sbml/packages/qual/extension/QualExtension.cpp
base/sbml/packages/qual/extension/QualExtension.h
base/sbml/packages/qual/extension/QualModelPlugin.cpp
base/sbml/packages/qual/extension/QualModelPlugin.h
base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp
base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.h
base/sbml/packages/qual/sbml/DefaultTerm.cpp
base/sbml/packages/qual/sbml/DefaultTerm.h
base/sbml/packages/qual/sbml/FunctionTerm.cpp
base/sbml/packages/qual/sbml/FunctionTerm.h
base/sbml/packages/qual/sbml/Input.cpp
base/sbml/packages/qual/sbml/Input.h
base/sbml/packages/qual/sbml/Output.cpp
base/sbml/packages/qual/sbml/Output.h
base/sbml/packages/qual/sbml/QualitativeSpecies.cpp
base/sbml/packages/qual/sbml/QualitativeSpecies.h
base/sbml/packages/qual/sbml/Transition.cpp
base/sbml/packages/qual/sbml/Transition.h
base/sbml/packages/qual/validator/QualConsistencyValidator.cpp
base/sbml/packages/qual/validator/QualConsistencyValidator.h
base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp
base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h
base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp
base/sbml/packages/qual/validator/QualMathConsistencyValidator.h
base/sbml/packages/qual/validator/QualSBMLError.h
base/sbml/packages/qual/validator/QualSBMLErrorTable.h
base/sbml/packages/qual/validator/QualValidator.cpp
base/sbml/packages/qual/validator/QualValidator.h
base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp
base/sbml/packages/qual/validator/constraints/QSAssignedOnce.h
base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp
base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h
base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp
base/sbml/packages/qual/validator/constraints/QualConsistencyConstraintsDeclared.cxx
base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp
base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraintsDeclared.cxx
base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp
base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraintsDeclared.cxx
base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp
base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h
base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp
base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.h
base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp
base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.h
base/sbml/packages/render/common/RenderExtensionTypes.h
base/sbml/packages/render/common/renderfwd.h
base/sbml/packages/render/extension/RenderExtension.cpp
base/sbml/packages/render/extension/RenderExtension.h
base/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp
base/sbml/packages/render/extension/RenderGraphicalObjectPlugin.h
base/sbml/packages/render/extension/RenderLayoutPlugin.cpp
base/sbml/packages/render/extension/RenderLayoutPlugin.h
base/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp
base/sbml/packages/render/extension/RenderListOfLayoutsPlugin.h
base/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp
base/sbml/packages/render/extension/RenderSBMLDocumentPlugin.h
base/sbml/packages/render/sbml/ColorDefinition.cpp
base/sbml/packages/render/sbml/ColorDefinition.h
base/sbml/packages/render/sbml/DefaultValues.cpp
base/sbml/packages/render/sbml/DefaultValues.h
base/sbml/packages/render/sbml/Ellipse.cpp
base/sbml/packages/render/sbml/Ellipse.h
base/sbml/packages/render/sbml/GlobalRenderInformation.cpp
base/sbml/packages/render/sbml/GlobalRenderInformation.h
base/sbml/packages/render/sbml/GlobalStyle.cpp
base/sbml/packages/render/sbml/GlobalStyle.h
base/sbml/packages/render/sbml/GradientBase.cpp
base/sbml/packages/render/sbml/GradientBase.h
base/sbml/packages/render/sbml/GradientStop.cpp
base/sbml/packages/render/sbml/GradientStop.h
base/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp
base/sbml/packages/render/sbml/GraphicalPrimitive1D.h
base/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp
base/sbml/packages/render/sbml/GraphicalPrimitive2D.h
base/sbml/packages/render/sbml/Image.cpp
base/sbml/packages/render/sbml/Image.h
base/sbml/packages/render/sbml/LineEnding.cpp
base/sbml/packages/render/sbml/LineEnding.h
base/sbml/packages/render/sbml/LinearGradient.cpp
base/sbml/packages/render/sbml/LinearGradient.h
base/sbml/packages/render/sbml/ListOfColorDefinitions.cpp
base/sbml/packages/render/sbml/ListOfColorDefinitions.h
base/sbml/packages/render/sbml/ListOfCurveElements.cpp
base/sbml/packages/render/sbml/ListOfCurveElements.h
base/sbml/packages/render/sbml/ListOfDrawables.cpp
base/sbml/packages/render/sbml/ListOfDrawables.h
base/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp
base/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h
base/sbml/packages/render/sbml/ListOfGlobalStyles.cpp
base/sbml/packages/render/sbml/ListOfGlobalStyles.h
base/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp
base/sbml/packages/render/sbml/ListOfGradientDefinitions.h
base/sbml/packages/render/sbml/ListOfGradientStops.cpp
base/sbml/packages/render/sbml/ListOfGradientStops.h
base/sbml/packages/render/sbml/ListOfLineEndings.cpp
base/sbml/packages/render/sbml/ListOfLineEndings.h
base/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp
base/sbml/packages/render/sbml/ListOfLocalRenderInformation.h
base/sbml/packages/render/sbml/ListOfLocalStyles.cpp
base/sbml/packages/render/sbml/ListOfLocalStyles.h
base/sbml/packages/render/sbml/LocalRenderInformation.cpp
base/sbml/packages/render/sbml/LocalRenderInformation.h
base/sbml/packages/render/sbml/LocalStyle.cpp
base/sbml/packages/render/sbml/LocalStyle.h
base/sbml/packages/render/sbml/Polygon.cpp
base/sbml/packages/render/sbml/Polygon.h
base/sbml/packages/render/sbml/RadialGradient.cpp
base/sbml/packages/render/sbml/RadialGradient.h
base/sbml/packages/render/sbml/Rectangle.cpp
base/sbml/packages/render/sbml/Rectangle.h
base/sbml/packages/render/sbml/RelAbsVector.cpp
base/sbml/packages/render/sbml/RelAbsVector.h
base/sbml/packages/render/sbml/RenderCubicBezier.cpp
base/sbml/packages/render/sbml/RenderCubicBezier.h
base/sbml/packages/render/sbml/RenderCurve.cpp
base/sbml/packages/render/sbml/RenderCurve.h
base/sbml/packages/render/sbml/RenderGroup.cpp
base/sbml/packages/render/sbml/RenderGroup.h
base/sbml/packages/render/sbml/RenderInformationBase.cpp
base/sbml/packages/render/sbml/RenderInformationBase.h
base/sbml/packages/render/sbml/RenderPoint.cpp
base/sbml/packages/render/sbml/RenderPoint.h
base/sbml/packages/render/sbml/Style.cpp
base/sbml/packages/render/sbml/Style.h
base/sbml/packages/render/sbml/Text.cpp
base/sbml/packages/render/sbml/Text.h
base/sbml/packages/render/sbml/Transformation.cpp
base/sbml/packages/render/sbml/Transformation.h
base/sbml/packages/render/sbml/Transformation2D.cpp
base/sbml/packages/render/sbml/Transformation2D.h
base/sbml/packages/render/util/RenderLayoutConverter.cpp
base/sbml/packages/render/util/RenderLayoutConverter.h
base/sbml/packages/render/util/RenderUtilities.cpp
base/sbml/packages/render/util/RenderUtilities.h
base/sbml/packages/render/validator/RenderConsistencyValidator.cpp
base/sbml/packages/render/validator/RenderConsistencyValidator.h
base/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp
base/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.h
base/sbml/packages/render/validator/RenderSBMLError.h
base/sbml/packages/render/validator/RenderSBMLErrorTable.h
base/sbml/packages/render/validator/RenderValidator.cpp
base/sbml/packages/render/validator/RenderValidator.h
base/sbml/packages/render/validator/constraints/RenderConsistencyConstraints.cpp
base/sbml/packages/render/validator/constraints/RenderConsistencyConstraintsDeclared.cxx
base/sbml/packages/render/validator/constraints/RenderIdentifierConsistencyConstraints.cpp
base/sbml/packages/render/validator/constraints/RenderIdentifierConsistencyConstraintsDeclared.cxx
base/sbml/units/FormulaUnitsData.cpp
base/sbml/units/FormulaUnitsData.h
base/sbml/units/UnitFormulaFormatter.cpp
base/sbml/units/UnitFormulaFormatter.h
base/sbml/units/UnitKindList.cpp
base/sbml/units/UnitKindList.h
base/sbml/util/CallbackRegistry.cpp
base/sbml/util/CallbackRegistry.h
base/sbml/util/ElementFilter.cpp
base/sbml/util/ElementFilter.h
base/sbml/util/IdFilter.cpp
base/sbml/util/IdFilter.h
base/sbml/util/IdList.cpp
base/sbml/util/IdList.h
base/sbml/util/IdentifierTransformer.cpp
base/sbml/util/IdentifierTransformer.h
base/sbml/util/List.cpp
base/sbml/util/List.h
base/sbml/util/MathFilter.cpp
base/sbml/util/MathFilter.h
base/sbml/util/MetaIdFilter.cpp
base/sbml/util/MetaIdFilter.h
base/sbml/util/PrefixTransformer.cpp
base/sbml/util/PrefixTransformer.h
base/sbml/util/Stack.h
base/sbml/util/StringBuffer.h
base/sbml/util/memory.h
base/sbml/util/util.cpp
base/sbml/util/util.h
base/sbml/validator/ConsistencyValidator.cpp
base/sbml/validator/ConsistencyValidator.h
base/sbml/validator/ConstraintMacros.h
base/sbml/validator/IdentifierConsistencyValidator.cpp
base/sbml/validator/IdentifierConsistencyValidator.h
base/sbml/validator/InternalConsistencyValidator.cpp
base/sbml/validator/InternalConsistencyValidator.h
base/sbml/validator/L1CompatibilityValidator.cpp
base/sbml/validator/L1CompatibilityValidator.h
base/sbml/validator/L2v1CompatibilityValidator.cpp
base/sbml/validator/L2v1CompatibilityValidator.h
base/sbml/validator/L2v2CompatibilityValidator.cpp
base/sbml/validator/L2v2CompatibilityValidator.h
base/sbml/validator/L2v3CompatibilityValidator.cpp
base/sbml/validator/L2v3CompatibilityValidator.h
base/sbml/validator/L2v4CompatibilityValidator.cpp
base/sbml/validator/L2v4CompatibilityValidator.h
base/sbml/validator/L3v1CompatibilityValidator.cpp
base/sbml/validator/L3v1CompatibilityValidator.h
base/sbml/validator/L3v2CompatibilityValidator.cpp
base/sbml/validator/L3v2CompatibilityValidator.h
base/sbml/validator/MathMLConsistencyValidator.cpp
base/sbml/validator/MathMLConsistencyValidator.h
base/sbml/validator/ModelingPracticeValidator.cpp
base/sbml/validator/ModelingPracticeValidator.h
base/sbml/validator/OverdeterminedValidator.cpp
base/sbml/validator/OverdeterminedValidator.h
base/sbml/validator/SBMLExternalValidator.cpp
base/sbml/validator/SBMLExternalValidator.h
base/sbml/validator/SBMLInternalValidator.cpp
base/sbml/validator/SBMLInternalValidator.h
base/sbml/validator/SBMLValidator.cpp
base/sbml/validator/SBMLValidator.h
base/sbml/validator/SBOConsistencyValidator.cpp
base/sbml/validator/SBOConsistencyValidator.h
base/sbml/validator/StrictUnitConsistencyValidator.cpp
base/sbml/validator/StrictUnitConsistencyValidator.h
base/sbml/validator/UnitConsistencyValidator.cpp
base/sbml/validator/UnitConsistencyValidator.h
base/sbml/validator/VConstraint.cpp
base/sbml/validator/VConstraint.h
base/sbml/validator/Validator.cpp
base/sbml/validator/Validator.h
base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp
base/sbml/validator/constraints/ArgumentsUnitsCheck.h
base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp
base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.h
base/sbml/validator/constraints/AssignmentCycles.cpp
base/sbml/validator/constraints/AssignmentCycles.h
base/sbml/validator/constraints/AssignmentRuleOrdering.cpp
base/sbml/validator/constraints/AssignmentRuleOrdering.h
base/sbml/validator/constraints/CiElementMathCheck.cpp
base/sbml/validator/constraints/CiElementMathCheck.h
base/sbml/validator/constraints/CiElementNot0DComp.cpp
base/sbml/validator/constraints/CiElementNot0DComp.h
base/sbml/validator/constraints/CompartmentOutsideCycles.cpp
base/sbml/validator/constraints/CompartmentOutsideCycles.h
base/sbml/validator/constraints/CompatibilityConstraints.cxx
base/sbml/validator/constraints/ConsistencyConstraints.cpp
base/sbml/validator/constraints/ConsistencyConstraintsDeclared.cxx
base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp
base/sbml/validator/constraints/DuplicateTopLevelAnnotation.h
base/sbml/validator/constraints/EqualityArgsMathCheck.cpp
base/sbml/validator/constraints/EqualityArgsMathCheck.h
base/sbml/validator/constraints/ExponentUnitsCheck.cpp
base/sbml/validator/constraints/ExponentUnitsCheck.h
base/sbml/validator/constraints/FunctionApplyMathCheck.cpp
base/sbml/validator/constraints/FunctionApplyMathCheck.h
base/sbml/validator/constraints/FunctionDefinitionRecursion.cpp
base/sbml/validator/constraints/FunctionDefinitionRecursion.h
base/sbml/validator/constraints/FunctionDefinitionVars.cpp
base/sbml/validator/constraints/FunctionDefinitionVars.h
base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp
base/sbml/validator/constraints/FunctionNoArgsMathCheck.h
base/sbml/validator/constraints/FunctionReferredToExists.cpp
base/sbml/validator/constraints/FunctionReferredToExists.h
base/sbml/validator/constraints/IdBase.cpp
base/sbml/validator/constraints/IdBase.h
base/sbml/validator/constraints/IdNameNewOnSBase.cpp
base/sbml/validator/constraints/IdNameNewOnSBase.h
base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp
base/sbml/validator/constraints/IdentifierConsistencyConstraintsDeclared.cxx
base/sbml/validator/constraints/InternalConsistencyConstraints.cpp
base/sbml/validator/constraints/InternalConsistencyConstraintsDeclared.cxx
base/sbml/validator/constraints/KineticLawUnitsCheck.cpp
base/sbml/validator/constraints/KineticLawUnitsCheck.h
base/sbml/validator/constraints/KineticLawVars.cpp
base/sbml/validator/constraints/KineticLawVars.h
base/sbml/validator/constraints/L1CompatibilityConstraints.cpp
base/sbml/validator/constraints/L1CompatibilityConstraintsDeclared.cxx
base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp
base/sbml/validator/constraints/L2v1CompatibilityConstraintsDeclared.cxx
base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp
base/sbml/validator/constraints/L2v2CompatibilityConstraintsDeclared.cxx
base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp
base/sbml/validator/constraints/L2v3CompatibilityConstraintsDeclared.cxx
base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp
base/sbml/validator/constraints/L2v4CompatibilityConstraintsDeclared.cxx
base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp
base/sbml/validator/constraints/L3v1CompatibilityConstraintsDeclared.cxx
base/sbml/validator/constraints/L3v2CompatibilityConstraints.cpp
base/sbml/validator/constraints/L3v2CompatibilityConstraintsDeclared.cxx
base/sbml/validator/constraints/LambdaMathCheck.cpp
base/sbml/validator/constraints/LambdaMathCheck.h
base/sbml/validator/constraints/LocalParameterMathCheck.cpp
base/sbml/validator/constraints/LocalParameterMathCheck.h
base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp
base/sbml/validator/constraints/LocalParameterShadowsIdInModel.h
base/sbml/validator/constraints/LogicalArgsMathCheck.cpp
base/sbml/validator/constraints/LogicalArgsMathCheck.h
base/sbml/validator/constraints/MathMLBase.cpp
base/sbml/validator/constraints/MathMLBase.h
base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp
base/sbml/validator/constraints/MathMLConsistencyConstraintsDeclared.cxx
base/sbml/validator/constraints/ModelUnitsDangling.cpp
base/sbml/validator/constraints/ModelUnitsDangling.h
base/sbml/validator/constraints/ModelingPracticeConstraints.cpp
base/sbml/validator/constraints/ModelingPracticeConstraintsDeclared.cxx
base/sbml/validator/constraints/NumberArgsMathCheck.cpp
base/sbml/validator/constraints/NumberArgsMathCheck.h
base/sbml/validator/constraints/NumericArgsMathCheck.cpp
base/sbml/validator/constraints/NumericArgsMathCheck.h
base/sbml/validator/constraints/NumericReturnMathCheck.cpp
base/sbml/validator/constraints/NumericReturnMathCheck.h
base/sbml/validator/constraints/OverDeterminedCheck.cpp
base/sbml/validator/constraints/OverDeterminedCheck.h
base/sbml/validator/constraints/OverdeterminedConstraints.cpp
base/sbml/validator/constraints/OverdeterminedConstraintsDeclared.cxx
base/sbml/validator/constraints/PieceBooleanMathCheck.cpp
base/sbml/validator/constraints/PieceBooleanMathCheck.h
base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp
base/sbml/validator/constraints/PiecewiseValueMathCheck.h
base/sbml/validator/constraints/PowerUnitsCheck.cpp
base/sbml/validator/constraints/PowerUnitsCheck.h
base/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp
base/sbml/validator/constraints/RateOfAssignmentMathCheck.h
base/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp
base/sbml/validator/constraints/RateOfCiTargetMathCheck.h
base/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp
base/sbml/validator/constraints/RateOfCompartmentMathCheck.h
base/sbml/validator/constraints/RateOfCycles.cpp
base/sbml/validator/constraints/RateOfCycles.h
base/sbml/validator/constraints/ReportEmptyListOf.cpp
base/sbml/validator/constraints/ReportEmptyListOf.h
base/sbml/validator/constraints/SBOConsistencyConstraints.cpp
base/sbml/validator/constraints/SBOConsistencyConstraintsDeclared.cxx
base/sbml/validator/constraints/SpeciesReactionOrRule.cpp
base/sbml/validator/constraints/SpeciesReactionOrRule.h
base/sbml/validator/constraints/StoichiometryMathVars.cpp
base/sbml/validator/constraints/StoichiometryMathVars.h
base/sbml/validator/constraints/StrictUnitConsistencyConstraints.cpp
base/sbml/validator/constraints/StrictUnitConsistencyConstraintsDeclared.cxx
base/sbml/validator/constraints/UniqueIdBase.cpp
base/sbml/validator/constraints/UniqueIdBase.h
base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp
base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.h
base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp
base/sbml/validator/constraints/UniqueIdsInKineticLaw.h
base/sbml/validator/constraints/UniqueIdsInModel.cpp
base/sbml/validator/constraints/UniqueIdsInModel.h
base/sbml/validator/constraints/UniqueMetaId.cpp
base/sbml/validator/constraints/UniqueMetaId.h
base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp
base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.h
base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp
base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.h
base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp
base/sbml/validator/constraints/UniqueVarsInEventAssignments.h
base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp
base/sbml/validator/constraints/UniqueVarsInEventsAndRules.h
base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp
base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.h
base/sbml/validator/constraints/UniqueVarsInRules.cpp
base/sbml/validator/constraints/UniqueVarsInRules.h
base/sbml/validator/constraints/UnitConsistencyConstraints.cpp
base/sbml/validator/constraints/UnitConsistencyConstraintsDeclared.cxx
base/sbml/validator/constraints/UnitsBase.cpp
base/sbml/validator/constraints/UnitsBase.h
base/sbml/validator/constraints/ValidCnUnitsValue.cpp
base/sbml/validator/constraints/ValidCnUnitsValue.h
base/sbml/xml/LibXMLAttributes.cpp
base/sbml/xml/LibXMLAttributes.h
base/sbml/xml/LibXMLHandler.cpp
base/sbml/xml/LibXMLHandler.h
base/sbml/xml/LibXMLNamespaces.cpp
base/sbml/xml/LibXMLNamespaces.h
base/sbml/xml/LibXMLParser.cpp
base/sbml/xml/LibXMLParser.h
base/sbml/xml/LibXMLTranscode.cpp
base/sbml/xml/LibXMLTranscode.h
base/sbml/xml/XMLAttributes.cpp
base/sbml/xml/XMLAttributes.h
base/sbml/xml/XMLBuffer.cpp
base/sbml/xml/XMLBuffer.h
base/sbml/xml/XMLConstructorException.cpp
base/sbml/xml/XMLConstructorException.h
base/sbml/xml/XMLError.cpp
base/sbml/xml/XMLError.h
base/sbml/xml/XMLErrorLog.cpp
base/sbml/xml/XMLErrorLog.h
base/sbml/xml/XMLExtern.h
base/sbml/xml/XMLFileBuffer.cpp
base/sbml/xml/XMLFileBuffer.h
base/sbml/xml/XMLHandler.cpp
base/sbml/xml/XMLHandler.h
base/sbml/xml/XMLInputStream.cpp
base/sbml/xml/XMLInputStream.h
base/sbml/xml/XMLLogOverride.cpp
base/sbml/xml/XMLLogOverride.h
base/sbml/xml/XMLMemoryBuffer.cpp
base/sbml/xml/XMLMemoryBuffer.h
base/sbml/xml/XMLNamespaces.cpp
base/sbml/xml/XMLNamespaces.h
base/sbml/xml/XMLNode.cpp
base/sbml/xml/XMLNode.h
base/sbml/xml/XMLOutputStream.cpp
base/sbml/xml/XMLOutputStream.h
base/sbml/xml/XMLParser.cpp
base/sbml/xml/XMLParser.h
base/sbml/xml/XMLToken.cpp
base/sbml/xml/XMLToken.h
base/sbml/xml/XMLTokenizer.cpp
base/sbml/xml/XMLTokenizer.h
base/sbml/xml/XMLTriple.cpp
base/sbml/xml/XMLTriple.h
libsbml/__init__.py
python_libsbml.egg-info/PKG-INFO
python_libsbml.egg-info/SOURCES.txt
python_libsbml.egg-info/dependency_links.txt
python_libsbml.egg-info/top_level.txt
script/libsbml2.py
script/libsbml3.py
swig/ListWrapper.h
swig/OStream.cpp
swig/OStream.h
swig/comp-package.h
swig/fbc-package.h
swig/groups-package.h
swig/l3v2extendedmath-package.h
swig/layout-package.h
swig/libsbml-packages.h
swig/libsbml.h
swig/multi-package.h
swig/qual-package.h
swig/render-package.h