# file GENERATED by distutils, do NOT edit
setup.py
./base\libsbml_wrap.cpp
./base/sbml\AlgebraicRule.cpp
./base/sbml\AssignmentRule.cpp
./base/sbml\Compartment.cpp
./base/sbml\CompartmentType.cpp
./base/sbml\Constraint.cpp
./base/sbml\Delay.cpp
./base/sbml\Event.cpp
./base/sbml\EventAssignment.cpp
./base/sbml\ExpectedAttributes.cpp
./base/sbml\FunctionDefinition.cpp
./base/sbml\InitialAssignment.cpp
./base/sbml\KineticLaw.cpp
./base/sbml\ListOf.cpp
./base/sbml\LocalParameter.cpp
./base/sbml\Model.cpp
./base/sbml\ModifierSpeciesReference.cpp
./base/sbml\Parameter.cpp
./base/sbml\Priority.cpp
./base/sbml\RateRule.cpp
./base/sbml\Reaction.cpp
./base/sbml\Rule.cpp
./base/sbml\SBMLConstructorException.cpp
./base/sbml\SBMLConvert.cpp
./base/sbml\SBMLDocument.cpp
./base/sbml\SBMLError.cpp
./base/sbml\SBMLErrorLog.cpp
./base/sbml\SBMLNamespaces.cpp
./base/sbml\SBMLReader.cpp
./base/sbml\SBMLTransforms.cpp
./base/sbml\SBMLTypeCodes.cpp
./base/sbml\SBMLVisitor.cpp
./base/sbml\SBMLWriter.cpp
./base/sbml\SBO.cpp
./base/sbml\SBase.cpp
./base/sbml\SimpleSpeciesReference.cpp
./base/sbml\Species.cpp
./base/sbml\SpeciesReference.cpp
./base/sbml\SpeciesType.cpp
./base/sbml\StoichiometryMath.cpp
./base/sbml\SyntaxChecker.cpp
./base/sbml\Trigger.cpp
./base/sbml\Unit.cpp
./base/sbml\UnitDefinition.cpp
./base/sbml\UnitKind.c
./base/sbml\annotation\CVTerm.cpp
./base/sbml\annotation\Date.cpp
./base/sbml\annotation\ModelCreator.cpp
./base/sbml\annotation\ModelHistory.cpp
./base/sbml\annotation\RDFAnnotationParser.cpp
./base/sbml\common\libsbml-version.cpp
./base/sbml\common\operationReturnValues.cpp
./base/sbml\compress\CompressCommon.cpp
./base/sbml\compress\InputDecompressor.cpp
./base/sbml\compress\OutputCompressor.cpp
./base/sbml\compress\bzfstream.cpp
./base/sbml\compress\ioapi.c
./base/sbml\compress\iowin32.c
./base/sbml\compress\unzip.c
./base/sbml\compress\zfstream.cpp
./base/sbml\compress\zip.c
./base/sbml\compress\zipfstream.cpp
./base/sbml\conversion\ConversionOption.cpp
./base/sbml\conversion\ConversionProperties.cpp
./base/sbml\conversion\RegisterConverters.cpp
./base/sbml\conversion\SBMLConverter.cpp
./base/sbml\conversion\SBMLConverterRegistry.cpp
./base/sbml\conversion\SBMLFunctionDefinitionConverter.cpp
./base/sbml\conversion\SBMLIdConverter.cpp
./base/sbml\conversion\SBMLInferUnitsConverter.cpp
./base/sbml\conversion\SBMLInitialAssignmentConverter.cpp
./base/sbml\conversion\SBMLLevel1Version1Converter.cpp
./base/sbml\conversion\SBMLLevelVersionConverter.cpp
./base/sbml\conversion\SBMLLocalParameterConverter.cpp
./base/sbml\conversion\SBMLReactionConverter.cpp
./base/sbml\conversion\SBMLRuleConverter.cpp
./base/sbml\conversion\SBMLStripPackageConverter.cpp
./base/sbml\conversion\SBMLUnitsConverter.cpp
./base/sbml\extension\ASTBasePlugin.cpp
./base/sbml\extension\ISBMLExtensionNamespaces.cpp
./base/sbml\extension\SBMLDocumentPlugin.cpp
./base/sbml\extension\SBMLDocumentPluginNotRequired.cpp
./base/sbml\extension\SBMLExtension.cpp
./base/sbml\extension\SBMLExtensionException.cpp
./base/sbml\extension\SBMLExtensionNamespaces.cpp
./base/sbml\extension\SBMLExtensionRegistry.cpp
./base/sbml\extension\SBaseExtensionPoint.cpp
./base/sbml\extension\SBasePlugin.cpp
./base/sbml\extension\SBasePluginCreatorBase.cpp
./base/sbml\math\ASTNode.cpp
./base/sbml\math\FormulaFormatter.c
./base/sbml\math\FormulaParser.c
./base/sbml\math\FormulaTokenizer.c
./base/sbml\math\L3FormulaFormatter.c
./base/sbml\math\L3Parser.cpp
./base/sbml\math\L3ParserSettings.cpp
./base/sbml\math\MathML.cpp
./base/sbml\packages\comp\extension\CompExtension.cpp
./base/sbml\packages\comp\extension\CompModelPlugin.cpp
./base/sbml\packages\comp\extension\CompSBMLDocumentPlugin.cpp
./base/sbml\packages\comp\extension\CompSBasePlugin.cpp
./base/sbml\packages\comp\sbml\CompBase.cpp
./base/sbml\packages\comp\sbml\Deletion.cpp
./base/sbml\packages\comp\sbml\ExternalModelDefinition.cpp
./base/sbml\packages\comp\sbml\ListOfDeletions.cpp
./base/sbml\packages\comp\sbml\ListOfExternalModelDefinitions.cpp
./base/sbml\packages\comp\sbml\ListOfModelDefinitions.cpp
./base/sbml\packages\comp\sbml\ListOfPorts.cpp
./base/sbml\packages\comp\sbml\ListOfReplacedElements.cpp
./base/sbml\packages\comp\sbml\ListOfSubmodels.cpp
./base/sbml\packages\comp\sbml\ModelDefinition.cpp
./base/sbml\packages\comp\sbml\Port.cpp
./base/sbml\packages\comp\sbml\ReplacedBy.cpp
./base/sbml\packages\comp\sbml\ReplacedElement.cpp
./base/sbml\packages\comp\sbml\Replacing.cpp
./base/sbml\packages\comp\sbml\SBaseRef.cpp
./base/sbml\packages\comp\sbml\Submodel.cpp
./base/sbml\packages\comp\util\CompFlatteningConverter.cpp
./base/sbml\packages\comp\util\SBMLFileResolver.cpp
./base/sbml\packages\comp\util\SBMLResolver.cpp
./base/sbml\packages\comp\util\SBMLResolverRegistry.cpp
./base/sbml\packages\comp\util\SBMLUri.cpp
./base/sbml\packages\comp\validator\CompConsistencyValidator.cpp
./base/sbml\packages\comp\validator\CompIdentifierConsistencyValidator.cpp
./base/sbml\packages\comp\validator\CompUnitConsistencyValidator.cpp
./base/sbml\packages\comp\validator\CompValidator.cpp
./base/sbml\packages\comp\validator\constraints\ClassReplacements.cpp
./base/sbml\packages\comp\validator\constraints\CompConsistencyConstraints.cpp
./base/sbml\packages\comp\validator\constraints\CompIdBase.cpp
./base/sbml\packages\comp\validator\constraints\CompIdentifierConsistencyConstraints.cpp
./base/sbml\packages\comp\validator\constraints\CompUnitConsistencyConstraints.cpp
./base/sbml\packages\comp\validator\constraints\ExtModelReferenceCycles.cpp
./base/sbml\packages\comp\validator\constraints\PackageIdReplacementCheck.cpp
./base/sbml\packages\comp\validator\constraints\SubmodelReferenceCycles.cpp
./base/sbml\packages\comp\validator\constraints\UniqueCompIdBase.cpp
./base/sbml\packages\comp\validator\constraints\UniqueComponentIds.cpp
./base/sbml\packages\comp\validator\constraints\UniqueModelIds.cpp
./base/sbml\packages\comp\validator\constraints\UniquePortIds.cpp
./base/sbml\packages\comp\validator\constraints\UniquePortReferences.cpp
./base/sbml\packages\comp\validator\constraints\UniqueReplacedReferences.cpp
./base/sbml\packages\comp\validator\constraints\UnitReplacementCheck.cpp
./base/sbml\packages\fbc\extension\FbcExtension.cpp
./base/sbml\packages\fbc\extension\FbcModelPlugin.cpp
./base/sbml\packages\fbc\extension\FbcReactionPlugin.cpp
./base/sbml\packages\fbc\extension\FbcSBMLDocumentPlugin.cpp
./base/sbml\packages\fbc\extension\FbcSpeciesPlugin.cpp
./base/sbml\packages\fbc\sbml\Association.cpp
./base/sbml\packages\fbc\sbml\FbcAnd.cpp
./base/sbml\packages\fbc\sbml\FbcAssociation.cpp
./base/sbml\packages\fbc\sbml\FbcOr.cpp
./base/sbml\packages\fbc\sbml\FluxBound.cpp
./base/sbml\packages\fbc\sbml\FluxObjective.cpp
./base/sbml\packages\fbc\sbml\GeneAssociation.cpp
./base/sbml\packages\fbc\sbml\GeneProduct.cpp
./base/sbml\packages\fbc\sbml\GeneProductAssociation.cpp
./base/sbml\packages\fbc\sbml\GeneProductRef.cpp
./base/sbml\packages\fbc\sbml\Objective.cpp
./base/sbml\packages\fbc\util\CobraToFbcConverter.cpp
./base/sbml\packages\fbc\util\FbcToCobraConverter.cpp
./base/sbml\packages\fbc\util\FbcV1ToV2Converter.cpp
./base/sbml\packages\fbc\util\FbcV2ToV1Converter.cpp
./base/sbml\packages\fbc\validator\FbcConsistencyValidator.cpp
./base/sbml\packages\fbc\validator\FbcIdentifierConsistencyValidator.cpp
./base/sbml\packages\fbc\validator\FbcValidator.cpp
./base/sbml\packages\fbc\validator\constraints\FbcConsistencyConstraints.cpp
./base/sbml\packages\fbc\validator\constraints\FbcIdentifierConsistencyConstraints.cpp
./base/sbml\packages\fbc\validator\constraints\FluxBoundsConsistent.cpp
./base/sbml\packages\fbc\validator\constraints\UniqueGeneProductLabels.cpp
./base/sbml\packages\fbc\validator\constraints\UniqueModelWideIds.cpp
./base/sbml\packages\layout\extension\LayoutExtension.cpp
./base/sbml\packages\layout\extension\LayoutModelPlugin.cpp
./base/sbml\packages\layout\extension\LayoutSBMLDocumentPlugin.cpp
./base/sbml\packages\layout\extension\LayoutSpeciesReferencePlugin.cpp
./base/sbml\packages\layout\sbml\BoundingBox.cpp
./base/sbml\packages\layout\sbml\CompartmentGlyph.cpp
./base/sbml\packages\layout\sbml\CubicBezier.cpp
./base/sbml\packages\layout\sbml\Curve.cpp
./base/sbml\packages\layout\sbml\Dimensions.cpp
./base/sbml\packages\layout\sbml\GeneralGlyph.cpp
./base/sbml\packages\layout\sbml\GraphicalObject.cpp
./base/sbml\packages\layout\sbml\Layout.cpp
./base/sbml\packages\layout\sbml\LineSegment.cpp
./base/sbml\packages\layout\sbml\Point.cpp
./base/sbml\packages\layout\sbml\ReactionGlyph.cpp
./base/sbml\packages\layout\sbml\ReferenceGlyph.cpp
./base/sbml\packages\layout\sbml\SpeciesGlyph.cpp
./base/sbml\packages\layout\sbml\SpeciesReferenceGlyph.cpp
./base/sbml\packages\layout\sbml\TextGlyph.cpp
./base/sbml\packages\layout\util\LayoutAnnotation.cpp
./base/sbml\packages\layout\util\LayoutUtilities.cpp
./base/sbml\packages\layout\validator\LayoutConsistencyValidator.cpp
./base/sbml\packages\layout\validator\LayoutIdentifierConsistencyValidator.cpp
./base/sbml\packages\layout\validator\LayoutValidator.cpp
./base/sbml\packages\layout\validator\constraints\LayoutConsistencyConstraints.cpp
./base/sbml\packages\layout\validator\constraints\LayoutIdentifierConsistencyConstraints.cpp
./base/sbml\packages\layout\validator\constraints\UniqueIdsLayout.cpp
./base/sbml\packages\qual\extension\QualExtension.cpp
./base/sbml\packages\qual\extension\QualModelPlugin.cpp
./base/sbml\packages\qual\extension\QualSBMLDocumentPlugin.cpp
./base/sbml\packages\qual\sbml\DefaultTerm.cpp
./base/sbml\packages\qual\sbml\FunctionTerm.cpp
./base/sbml\packages\qual\sbml\Input.cpp
./base/sbml\packages\qual\sbml\Output.cpp
./base/sbml\packages\qual\sbml\QualitativeSpecies.cpp
./base/sbml\packages\qual\sbml\Transition.cpp
./base/sbml\packages\qual\validator\QualConsistencyValidator.cpp
./base/sbml\packages\qual\validator\QualIdentifierConsistencyValidator.cpp
./base/sbml\packages\qual\validator\QualMathConsistencyValidator.cpp
./base/sbml\packages\qual\validator\QualValidator.cpp
./base/sbml\packages\qual\validator\constraints\QSAssignedOnce.cpp
./base/sbml\packages\qual\validator\constraints\QualCSymbolMathCheck.cpp
./base/sbml\packages\qual\validator\constraints\QualConsistencyConstraints.cpp
./base/sbml\packages\qual\validator\constraints\QualIdentifierConsistencyConstraints.cpp
./base/sbml\packages\qual\validator\constraints\QualMathConsistencyConstraints.cpp
./base/sbml\packages\qual\validator\constraints\QualUniqueModelWideIds.cpp
./base/sbml\packages\qual\validator\constraints\ResultBecomesNegative.cpp
./base/sbml\packages\qual\validator\constraints\ResultExceedsMaximum.cpp
./base/sbml\units\FormulaUnitsData.cpp
./base/sbml\units\UnitFormulaFormatter.cpp
./base/sbml\units\UnitKindList.cpp
./base/sbml\util\ElementFilter.cpp
./base/sbml\util\IdFilter.cpp
./base/sbml\util\IdList.cpp
./base/sbml\util\IdentifierTransformer.cpp
./base/sbml\util\List.cpp
./base/sbml\util\MetaIdFilter.cpp
./base/sbml\util\PrefixTransformer.cpp
./base/sbml\util\Stack.c
./base/sbml\util\StringBuffer.c
./base/sbml\util\memory.c
./base/sbml\util\util.cpp
./base/sbml\validator\ConsistencyValidator.cpp
./base/sbml\validator\IdentifierConsistencyValidator.cpp
./base/sbml\validator\InternalConsistencyValidator.cpp
./base/sbml\validator\L1CompatibilityValidator.cpp
./base/sbml\validator\L2v1CompatibilityValidator.cpp
./base/sbml\validator\L2v2CompatibilityValidator.cpp
./base/sbml\validator\L2v3CompatibilityValidator.cpp
./base/sbml\validator\L2v4CompatibilityValidator.cpp
./base/sbml\validator\L3v1CompatibilityValidator.cpp
./base/sbml\validator\MathMLConsistencyValidator.cpp
./base/sbml\validator\ModelingPracticeValidator.cpp
./base/sbml\validator\OverdeterminedValidator.cpp
./base/sbml\validator\SBMLExternalValidator.cpp
./base/sbml\validator\SBMLInternalValidator.cpp
./base/sbml\validator\SBMLValidator.cpp
./base/sbml\validator\SBOConsistencyValidator.cpp
./base/sbml\validator\StrictUnitConsistencyValidator.cpp
./base/sbml\validator\UnitConsistencyValidator.cpp
./base/sbml\validator\VConstraint.cpp
./base/sbml\validator\Validator.cpp
./base/sbml\validator\constraints\ArgumentsUnitsCheck.cpp
./base/sbml\validator\constraints\ArgumentsUnitsCheckWarnings.cpp
./base/sbml\validator\constraints\AssignmentCycles.cpp
./base/sbml\validator\constraints\AssignmentRuleOrdering.cpp
./base/sbml\validator\constraints\CiElementMathCheck.cpp
./base/sbml\validator\constraints\CiElementNot0DComp.cpp
./base/sbml\validator\constraints\CompartmentOutsideCycles.cpp
./base/sbml\validator\constraints\ConsistencyConstraints.cpp
./base/sbml\validator\constraints\DuplicateTopLevelAnnotation.cpp
./base/sbml\validator\constraints\EqualityArgsMathCheck.cpp
./base/sbml\validator\constraints\ExponentUnitsCheck.cpp
./base/sbml\validator\constraints\FunctionApplyMathCheck.cpp
./base/sbml\validator\constraints\FunctionDefinitionRecursion.cpp
./base/sbml\validator\constraints\FunctionDefinitionVars.cpp
./base/sbml\validator\constraints\FunctionNoArgsMathCheck.cpp
./base/sbml\validator\constraints\FunctionReferredToExists.cpp
./base/sbml\validator\constraints\IdBase.cpp
./base/sbml\validator\constraints\IdentifierConsistencyConstraints.cpp
./base/sbml\validator\constraints\InternalConsistencyConstraints.cpp
./base/sbml\validator\constraints\KineticLawUnitsCheck.cpp
./base/sbml\validator\constraints\KineticLawVars.cpp
./base/sbml\validator\constraints\L1CompatibilityConstraints.cpp
./base/sbml\validator\constraints\L2v1CompatibilityConstraints.cpp
./base/sbml\validator\constraints\L2v2CompatibilityConstraints.cpp
./base/sbml\validator\constraints\L2v3CompatibilityConstraints.cpp
./base/sbml\validator\constraints\L2v4CompatibilityConstraints.cpp
./base/sbml\validator\constraints\L3v1CompatibilityConstraints.cpp
./base/sbml\validator\constraints\LambdaMathCheck.cpp
./base/sbml\validator\constraints\LocalParameterMathCheck.cpp
./base/sbml\validator\constraints\LocalParameterShadowsIdInModel.cpp
./base/sbml\validator\constraints\LogicalArgsMathCheck.cpp
./base/sbml\validator\constraints\MathMLBase.cpp
./base/sbml\validator\constraints\MathMLConsistencyConstraints.cpp
./base/sbml\validator\constraints\ModelingPracticeConstraints.cpp
./base/sbml\validator\constraints\NumberArgsMathCheck.cpp
./base/sbml\validator\constraints\NumericArgsMathCheck.cpp
./base/sbml\validator\constraints\NumericReturnMathCheck.cpp
./base/sbml\validator\constraints\OverDeterminedCheck.cpp
./base/sbml\validator\constraints\OverdeterminedConstraints.cpp
./base/sbml\validator\constraints\PieceBooleanMathCheck.cpp
./base/sbml\validator\constraints\PiecewiseValueMathCheck.cpp
./base/sbml\validator\constraints\PowerUnitsCheck.cpp
./base/sbml\validator\constraints\SBOConsistencyConstraints.cpp
./base/sbml\validator\constraints\SpeciesReactionOrRule.cpp
./base/sbml\validator\constraints\StoichiometryMathVars.cpp
./base/sbml\validator\constraints\StrictUnitConsistencyConstraints.cpp
./base/sbml\validator\constraints\UniqueIdBase.cpp
./base/sbml\validator\constraints\UniqueIdsForUnitDefinitions.cpp
./base/sbml\validator\constraints\UniqueIdsInKineticLaw.cpp
./base/sbml\validator\constraints\UniqueIdsInModel.cpp
./base/sbml\validator\constraints\UniqueMetaId.cpp
./base/sbml\validator\constraints\UniqueSpeciesTypesInCompartment.cpp
./base/sbml\validator\constraints\UniqueSymbolsInInitialAssignments.cpp
./base/sbml\validator\constraints\UniqueVarsInEventAssignments.cpp
./base/sbml\validator\constraints\UniqueVarsInEventsAndRules.cpp
./base/sbml\validator\constraints\UniqueVarsInInitialAssignmentsAndRules.cpp
./base/sbml\validator\constraints\UniqueVarsInRules.cpp
./base/sbml\validator\constraints\UnitConsistencyConstraints.cpp
./base/sbml\validator\constraints\UnitsBase.cpp
./base/sbml\validator\constraints\ValidCnUnitsValue.cpp
./base/sbml\xml\LibXMLAttributes.cpp
./base/sbml\xml\LibXMLHandler.cpp
./base/sbml\xml\LibXMLNamespaces.cpp
./base/sbml\xml\LibXMLParser.cpp
./base/sbml\xml\LibXMLTranscode.cpp
./base/sbml\xml\XMLAttributes.cpp
./base/sbml\xml\XMLBuffer.cpp
./base/sbml\xml\XMLConstructorException.cpp
./base/sbml\xml\XMLError.cpp
./base/sbml\xml\XMLErrorLog.cpp
./base/sbml\xml\XMLFileBuffer.cpp
./base/sbml\xml\XMLHandler.cpp
./base/sbml\xml\XMLInputStream.cpp
./base/sbml\xml\XMLLogOverride.cpp
./base/sbml\xml\XMLMemoryBuffer.cpp
./base/sbml\xml\XMLNamespaces.cpp
./base/sbml\xml\XMLNode.cpp
./base/sbml\xml\XMLOutputStream.cpp
./base/sbml\xml\XMLParser.cpp
./base/sbml\xml\XMLToken.cpp
./base/sbml\xml\XMLTokenizer.cpp
./base/sbml\xml\XMLTriple.cpp
base\ListWrapper.h
base\OStream.cpp
base\OStream.h
base\comp-package.h
base\fbc-package.h
base\layout-package.h
base\libsbml.h
base\libsbml_wrap.cpp
base\libsbml_wrap.h
base\local-downcast-converters-comp.cpp
base\local-downcast-converters-fbc.cpp
base\local-downcast-converters-layout.cpp
base\local-downcast-converters-qual.cpp
base\local-downcast-converters.cpp
base\local-downcast-extension-comp.cpp
base\local-downcast-extension-fbc.cpp
base\local-downcast-extension-layout.cpp
base\local-downcast-extension-qual.cpp
base\local-downcast-extension.cpp
base\local-downcast-namespaces-comp.cpp
base\local-downcast-namespaces-fbc.cpp
base\local-downcast-namespaces-layout.cpp
base\local-downcast-namespaces-qual.cpp
base\local-downcast-namespaces.cpp
base\local-downcast-packages-comp.cpp
base\local-downcast-packages-fbc.cpp
base\local-downcast-packages-layout.cpp
base\local-downcast-packages-qual.cpp
base\local-downcast-plugins-comp.cpp
base\local-downcast-plugins-fbc.cpp
base\local-downcast-plugins-layout.cpp
base\local-downcast-plugins-qual.cpp
base\local-downcast-plugins.cpp
base\local-downcast.cpp
base\local.cpp
base\qual-package.h
base\sbml\AlgebraicRule.cpp
base\sbml\AlgebraicRule.h
base\sbml\AssignmentRule.cpp
base\sbml\AssignmentRule.h
base\sbml\Compartment.cpp
base\sbml\Compartment.h
base\sbml\CompartmentType.cpp
base\sbml\CompartmentType.h
base\sbml\Constraint.cpp
base\sbml\Constraint.h
base\sbml\Delay.cpp
base\sbml\Delay.h
base\sbml\Event.cpp
base\sbml\Event.h
base\sbml\EventAssignment.cpp
base\sbml\EventAssignment.h
base\sbml\ExpectedAttributes.cpp
base\sbml\ExpectedAttributes.h
base\sbml\FunctionDefinition.cpp
base\sbml\FunctionDefinition.h
base\sbml\InitialAssignment.cpp
base\sbml\InitialAssignment.h
base\sbml\KineticLaw.cpp
base\sbml\KineticLaw.h
base\sbml\ListOf.cpp
base\sbml\ListOf.h
base\sbml\LocalParameter.cpp
base\sbml\LocalParameter.h
base\sbml\Model.cpp
base\sbml\Model.h
base\sbml\ModifierSpeciesReference.cpp
base\sbml\ModifierSpeciesReference.h
base\sbml\Parameter.cpp
base\sbml\Parameter.h
base\sbml\Priority.cpp
base\sbml\Priority.h
base\sbml\RateRule.cpp
base\sbml\RateRule.h
base\sbml\Reaction.cpp
base\sbml\Reaction.h
base\sbml\Rule.cpp
base\sbml\Rule.h
base\sbml\SBMLConstructorException.cpp
base\sbml\SBMLConstructorException.h
base\sbml\SBMLConvert.cpp
base\sbml\SBMLDocument.cpp
base\sbml\SBMLDocument.h
base\sbml\SBMLError.cpp
base\sbml\SBMLError.h
base\sbml\SBMLErrorLog.cpp
base\sbml\SBMLErrorLog.h
base\sbml\SBMLErrorTable.h
base\sbml\SBMLNamespaces.cpp
base\sbml\SBMLNamespaces.h
base\sbml\SBMLReader.cpp
base\sbml\SBMLReader.h
base\sbml\SBMLTransforms.cpp
base\sbml\SBMLTransforms.h
base\sbml\SBMLTypeCodes.cpp
base\sbml\SBMLTypeCodes.h
base\sbml\SBMLTypes.h
base\sbml\SBMLVisitor.cpp
base\sbml\SBMLVisitor.h
base\sbml\SBMLWriter.cpp
base\sbml\SBMLWriter.h
base\sbml\SBO.cpp
base\sbml\SBO.h
base\sbml\SBase.cpp
base\sbml\SBase.h
base\sbml\SimpleSpeciesReference.cpp
base\sbml\SimpleSpeciesReference.h
base\sbml\Species.cpp
base\sbml\Species.h
base\sbml\SpeciesReference.cpp
base\sbml\SpeciesReference.h
base\sbml\SpeciesType.cpp
base\sbml\SpeciesType.h
base\sbml\StoichiometryMath.cpp
base\sbml\StoichiometryMath.h
base\sbml\SyntaxChecker.cpp
base\sbml\SyntaxChecker.h
base\sbml\Trigger.cpp
base\sbml\Trigger.h
base\sbml\Unit.cpp
base\sbml\Unit.h
base\sbml\UnitDefinition.cpp
base\sbml\UnitDefinition.h
base\sbml\UnitKind.h
base\sbml\annotation\CVTerm.cpp
base\sbml\annotation\CVTerm.h
base\sbml\annotation\Date.cpp
base\sbml\annotation\Date.h
base\sbml\annotation\ModelCreator.cpp
base\sbml\annotation\ModelCreator.h
base\sbml\annotation\ModelHistory.cpp
base\sbml\annotation\ModelHistory.h
base\sbml\annotation\RDFAnnotation.h
base\sbml\annotation\RDFAnnotationParser.cpp
base\sbml\annotation\RDFAnnotationParser.h
base\sbml\common\common-documentation.h
base\sbml\common\common-sbmlerror-codes.h
base\sbml\common\common.h
base\sbml\common\extern.h
base\sbml\common\libsbml-config-common.h
base\sbml\common\libsbml-config-packages.h
base\sbml\common\libsbml-config.h
base\sbml\common\libsbml-namespace.h
base\sbml\common\libsbml-package.h
base\sbml\common\libsbml-version.cpp
base\sbml\common\libsbml-version.h
base\sbml\common\operationReturnValues.cpp
base\sbml\common\operationReturnValues.h
base\sbml\common\sbmlfwd.h
base\sbml\compress\CompressCommon.cpp
base\sbml\compress\CompressCommon.h
base\sbml\compress\InputDecompressor.cpp
base\sbml\compress\InputDecompressor.h
base\sbml\compress\OutputCompressor.cpp
base\sbml\compress\OutputCompressor.h
base\sbml\compress\bzfstream.cpp
base\sbml\compress\bzfstream.h
base\sbml\compress\crypt.h
base\sbml\compress\ioapi.h
base\sbml\compress\iowin32.h
base\sbml\compress\unzip.h
base\sbml\compress\zfstream.cpp
base\sbml\compress\zfstream.h
base\sbml\compress\zip.h
base\sbml\compress\zipfstream.cpp
base\sbml\compress\zipfstream.h
base\sbml\conversion\ConversionOption.cpp
base\sbml\conversion\ConversionOption.h
base\sbml\conversion\ConversionProperties.cpp
base\sbml\conversion\ConversionProperties.h
base\sbml\conversion\RegisterConverters.cpp
base\sbml\conversion\SBMLConverter.cpp
base\sbml\conversion\SBMLConverter.h
base\sbml\conversion\SBMLConverterRegister.h
base\sbml\conversion\SBMLConverterRegistry.cpp
base\sbml\conversion\SBMLConverterRegistry.h
base\sbml\conversion\SBMLFunctionDefinitionConverter.cpp
base\sbml\conversion\SBMLFunctionDefinitionConverter.h
base\sbml\conversion\SBMLIdConverter.cpp
base\sbml\conversion\SBMLIdConverter.h
base\sbml\conversion\SBMLInferUnitsConverter.cpp
base\sbml\conversion\SBMLInferUnitsConverter.h
base\sbml\conversion\SBMLInitialAssignmentConverter.cpp
base\sbml\conversion\SBMLInitialAssignmentConverter.h
base\sbml\conversion\SBMLLevel1Version1Converter.cpp
base\sbml\conversion\SBMLLevel1Version1Converter.h
base\sbml\conversion\SBMLLevelVersionConverter.cpp
base\sbml\conversion\SBMLLevelVersionConverter.h
base\sbml\conversion\SBMLLocalParameterConverter.cpp
base\sbml\conversion\SBMLLocalParameterConverter.h
base\sbml\conversion\SBMLReactionConverter.cpp
base\sbml\conversion\SBMLReactionConverter.h
base\sbml\conversion\SBMLRuleConverter.cpp
base\sbml\conversion\SBMLRuleConverter.h
base\sbml\conversion\SBMLStripPackageConverter.cpp
base\sbml\conversion\SBMLStripPackageConverter.h
base\sbml\conversion\SBMLUnitsConverter.cpp
base\sbml\conversion\SBMLUnitsConverter.h
base\sbml\extension\ASTBasePlugin.cpp
base\sbml\extension\ASTBasePlugin.h
base\sbml\extension\ISBMLExtensionNamespaces.cpp
base\sbml\extension\ISBMLExtensionNamespaces.h
base\sbml\extension\RegisterExtensions.cxx
base\sbml\extension\RegisterExtensions.h
base\sbml\extension\SBMLDocumentPlugin.cpp
base\sbml\extension\SBMLDocumentPlugin.h
base\sbml\extension\SBMLDocumentPluginNotRequired.cpp
base\sbml\extension\SBMLDocumentPluginNotRequired.h
base\sbml\extension\SBMLExtension.cpp
base\sbml\extension\SBMLExtension.h
base\sbml\extension\SBMLExtensionException.cpp
base\sbml\extension\SBMLExtensionException.h
base\sbml\extension\SBMLExtensionNamespaces.cpp
base\sbml\extension\SBMLExtensionNamespaces.h
base\sbml\extension\SBMLExtensionRegister.h
base\sbml\extension\SBMLExtensionRegistry.cpp
base\sbml\extension\SBMLExtensionRegistry.h
base\sbml\extension\SBaseExtensionPoint.cpp
base\sbml\extension\SBaseExtensionPoint.h
base\sbml\extension\SBasePlugin.cpp
base\sbml\extension\SBasePlugin.h
base\sbml\extension\SBasePluginCreator.h
base\sbml\extension\SBasePluginCreatorBase.cpp
base\sbml\extension\SBasePluginCreatorBase.h
base\sbml\math\ASTNode.cpp
base\sbml\math\ASTNode.h
base\sbml\math\FormulaFormatter.h
base\sbml\math\FormulaParser.h
base\sbml\math\FormulaTokenizer.h
base\sbml\math\L3FormulaFormatter.h
base\sbml\math\L3Parser.cpp
base\sbml\math\L3Parser.h
base\sbml\math\L3ParserSettings.cpp
base\sbml\math\L3ParserSettings.h
base\sbml\math\MathML.cpp
base\sbml\math\MathML.h
base\sbml\packages\comp-register.cxx
base\sbml\packages\comp-register.h
base\sbml\packages\fbc-register.cxx
base\sbml\packages\fbc-register.h
base\sbml\packages\layout-register.cxx
base\sbml\packages\layout-register.h
base\sbml\packages\qual-register.cxx
base\sbml\packages\qual-register.h
base\sbml\packages\comp\common\CompExtensionTypes.h
base\sbml\packages\comp\common\compfwd.h
base\sbml\packages\comp\extension\CompExtension.cpp
base\sbml\packages\comp\extension\CompExtension.h
base\sbml\packages\comp\extension\CompModelPlugin.cpp
base\sbml\packages\comp\extension\CompModelPlugin.h
base\sbml\packages\comp\extension\CompSBMLDocumentPlugin.cpp
base\sbml\packages\comp\extension\CompSBMLDocumentPlugin.h
base\sbml\packages\comp\extension\CompSBasePlugin.cpp
base\sbml\packages\comp\extension\CompSBasePlugin.h
base\sbml\packages\comp\sbml\CompBase.cpp
base\sbml\packages\comp\sbml\CompBase.h
base\sbml\packages\comp\sbml\Deletion.cpp
base\sbml\packages\comp\sbml\Deletion.h
base\sbml\packages\comp\sbml\ExternalModelDefinition.cpp
base\sbml\packages\comp\sbml\ExternalModelDefinition.h
base\sbml\packages\comp\sbml\ListOfDeletions.cpp
base\sbml\packages\comp\sbml\ListOfDeletions.h
base\sbml\packages\comp\sbml\ListOfExternalModelDefinitions.cpp
base\sbml\packages\comp\sbml\ListOfExternalModelDefinitions.h
base\sbml\packages\comp\sbml\ListOfModelDefinitions.cpp
base\sbml\packages\comp\sbml\ListOfModelDefinitions.h
base\sbml\packages\comp\sbml\ListOfPorts.cpp
base\sbml\packages\comp\sbml\ListOfPorts.h
base\sbml\packages\comp\sbml\ListOfReplacedElements.cpp
base\sbml\packages\comp\sbml\ListOfReplacedElements.h
base\sbml\packages\comp\sbml\ListOfSubmodels.cpp
base\sbml\packages\comp\sbml\ListOfSubmodels.h
base\sbml\packages\comp\sbml\ModelDefinition.cpp
base\sbml\packages\comp\sbml\ModelDefinition.h
base\sbml\packages\comp\sbml\Port.cpp
base\sbml\packages\comp\sbml\Port.h
base\sbml\packages\comp\sbml\ReplacedBy.cpp
base\sbml\packages\comp\sbml\ReplacedBy.h
base\sbml\packages\comp\sbml\ReplacedElement.cpp
base\sbml\packages\comp\sbml\ReplacedElement.h
base\sbml\packages\comp\sbml\Replacing.cpp
base\sbml\packages\comp\sbml\Replacing.h
base\sbml\packages\comp\sbml\SBaseRef.cpp
base\sbml\packages\comp\sbml\SBaseRef.h
base\sbml\packages\comp\sbml\Submodel.cpp
base\sbml\packages\comp\sbml\Submodel.h
base\sbml\packages\comp\util\CompFlatteningConverter.cpp
base\sbml\packages\comp\util\CompFlatteningConverter.h
base\sbml\packages\comp\util\SBMLFileResolver.cpp
base\sbml\packages\comp\util\SBMLFileResolver.h
base\sbml\packages\comp\util\SBMLResolver.cpp
base\sbml\packages\comp\util\SBMLResolver.h
base\sbml\packages\comp\util\SBMLResolverRegistry.cpp
base\sbml\packages\comp\util\SBMLResolverRegistry.h
base\sbml\packages\comp\util\SBMLUri.cpp
base\sbml\packages\comp\util\SBMLUri.h
base\sbml\packages\comp\validator\CompConsistencyValidator.cpp
base\sbml\packages\comp\validator\CompConsistencyValidator.h
base\sbml\packages\comp\validator\CompIdentifierConsistencyValidator.cpp
base\sbml\packages\comp\validator\CompIdentifierConsistencyValidator.h
base\sbml\packages\comp\validator\CompSBMLError.h
base\sbml\packages\comp\validator\CompSBMLErrorTable.h
base\sbml\packages\comp\validator\CompUnitConsistencyValidator.cpp
base\sbml\packages\comp\validator\CompUnitConsistencyValidator.h
base\sbml\packages\comp\validator\CompValidator.cpp
base\sbml\packages\comp\validator\CompValidator.h
base\sbml\packages\comp\validator\constraints\ClassReplacements.cpp
base\sbml\packages\comp\validator\constraints\ClassReplacements.h
base\sbml\packages\comp\validator\constraints\CompConsistencyConstraints.cpp
base\sbml\packages\comp\validator\constraints\CompConsistencyConstraintsDeclared.cxx
base\sbml\packages\comp\validator\constraints\CompIdBase.cpp
base\sbml\packages\comp\validator\constraints\CompIdBase.h
base\sbml\packages\comp\validator\constraints\CompIdentifierConsistencyConstraints.cpp
base\sbml\packages\comp\validator\constraints\CompIdentifierConsistencyConstraintsDeclared.cxx
base\sbml\packages\comp\validator\constraints\CompUnitConsistencyConstraints.cpp
base\sbml\packages\comp\validator\constraints\CompUnitConsistencyConstraintsDeclared.cxx
base\sbml\packages\comp\validator\constraints\ExtModelReferenceCycles.cpp
base\sbml\packages\comp\validator\constraints\ExtModelReferenceCycles.h
base\sbml\packages\comp\validator\constraints\PackageIdReplacementCheck.cpp
base\sbml\packages\comp\validator\constraints\PackageIdReplacementCheck.h
base\sbml\packages\comp\validator\constraints\SubmodelReferenceCycles.cpp
base\sbml\packages\comp\validator\constraints\SubmodelReferenceCycles.h
base\sbml\packages\comp\validator\constraints\UniqueCompIdBase.cpp
base\sbml\packages\comp\validator\constraints\UniqueCompIdBase.h
base\sbml\packages\comp\validator\constraints\UniqueComponentIds.cpp
base\sbml\packages\comp\validator\constraints\UniqueComponentIds.h
base\sbml\packages\comp\validator\constraints\UniqueModelIds.cpp
base\sbml\packages\comp\validator\constraints\UniqueModelIds.h
base\sbml\packages\comp\validator\constraints\UniquePortIds.cpp
base\sbml\packages\comp\validator\constraints\UniquePortIds.h
base\sbml\packages\comp\validator\constraints\UniquePortReferences.cpp
base\sbml\packages\comp\validator\constraints\UniquePortReferences.h
base\sbml\packages\comp\validator\constraints\UniqueReplacedReferences.cpp
base\sbml\packages\comp\validator\constraints\UniqueReplacedReferences.h
base\sbml\packages\comp\validator\constraints\UnitReplacementCheck.cpp
base\sbml\packages\comp\validator\constraints\UnitReplacementCheck.h
base\sbml\packages\fbc\common\FbcExtensionTypes.h
base\sbml\packages\fbc\common\fbcfwd.h
base\sbml\packages\fbc\extension\FbcExtension.cpp
base\sbml\packages\fbc\extension\FbcExtension.h
base\sbml\packages\fbc\extension\FbcModelPlugin.cpp
base\sbml\packages\fbc\extension\FbcModelPlugin.h
base\sbml\packages\fbc\extension\FbcReactionPlugin.cpp
base\sbml\packages\fbc\extension\FbcReactionPlugin.h
base\sbml\packages\fbc\extension\FbcSBMLDocumentPlugin.cpp
base\sbml\packages\fbc\extension\FbcSBMLDocumentPlugin.h
base\sbml\packages\fbc\extension\FbcSpeciesPlugin.cpp
base\sbml\packages\fbc\extension\FbcSpeciesPlugin.h
base\sbml\packages\fbc\sbml\Association.cpp
base\sbml\packages\fbc\sbml\Association.h
base\sbml\packages\fbc\sbml\FbcAnd.cpp
base\sbml\packages\fbc\sbml\FbcAnd.h
base\sbml\packages\fbc\sbml\FbcAssociation.cpp
base\sbml\packages\fbc\sbml\FbcAssociation.h
base\sbml\packages\fbc\sbml\FbcOr.cpp
base\sbml\packages\fbc\sbml\FbcOr.h
base\sbml\packages\fbc\sbml\FluxBound.cpp
base\sbml\packages\fbc\sbml\FluxBound.h
base\sbml\packages\fbc\sbml\FluxObjective.cpp
base\sbml\packages\fbc\sbml\FluxObjective.h
base\sbml\packages\fbc\sbml\GeneAssociation.cpp
base\sbml\packages\fbc\sbml\GeneAssociation.h
base\sbml\packages\fbc\sbml\GeneProduct.cpp
base\sbml\packages\fbc\sbml\GeneProduct.h
base\sbml\packages\fbc\sbml\GeneProductAssociation.cpp
base\sbml\packages\fbc\sbml\GeneProductAssociation.h
base\sbml\packages\fbc\sbml\GeneProductRef.cpp
base\sbml\packages\fbc\sbml\GeneProductRef.h
base\sbml\packages\fbc\sbml\Objective.cpp
base\sbml\packages\fbc\sbml\Objective.h
base\sbml\packages\fbc\util\CobraToFbcConverter.cpp
base\sbml\packages\fbc\util\CobraToFbcConverter.h
base\sbml\packages\fbc\util\FbcToCobraConverter.cpp
base\sbml\packages\fbc\util\FbcToCobraConverter.h
base\sbml\packages\fbc\util\FbcV1ToV2Converter.cpp
base\sbml\packages\fbc\util\FbcV1ToV2Converter.h
base\sbml\packages\fbc\util\FbcV2ToV1Converter.cpp
base\sbml\packages\fbc\util\FbcV2ToV1Converter.h
base\sbml\packages\fbc\validator\FbcConsistencyValidator.cpp
base\sbml\packages\fbc\validator\FbcConsistencyValidator.h
base\sbml\packages\fbc\validator\FbcIdentifierConsistencyValidator.cpp
base\sbml\packages\fbc\validator\FbcIdentifierConsistencyValidator.h
base\sbml\packages\fbc\validator\FbcSBMLError.h
base\sbml\packages\fbc\validator\FbcSBMLErrorTable.h
base\sbml\packages\fbc\validator\FbcValidator.cpp
base\sbml\packages\fbc\validator\FbcValidator.h
base\sbml\packages\fbc\validator\constraints\FbcConsistencyConstraints.cpp
base\sbml\packages\fbc\validator\constraints\FbcConsistencyConstraintsDeclared.cxx
base\sbml\packages\fbc\validator\constraints\FbcIdentifierConsistencyConstraints.cpp
base\sbml\packages\fbc\validator\constraints\FbcIdentifierConsistencyConstraintsDeclared.cxx
base\sbml\packages\fbc\validator\constraints\FluxBoundsConsistent.cpp
base\sbml\packages\fbc\validator\constraints\FluxBoundsConsistent.h
base\sbml\packages\fbc\validator\constraints\UniqueGeneProductLabels.cpp
base\sbml\packages\fbc\validator\constraints\UniqueGeneProductLabels.h
base\sbml\packages\fbc\validator\constraints\UniqueModelWideIds.cpp
base\sbml\packages\fbc\validator\constraints\UniqueModelWideIds.h
base\sbml\packages\layout\common\LayoutExtensionTypes.h
base\sbml\packages\layout\common\layoutfwd.h
base\sbml\packages\layout\extension\LayoutExtension.cpp
base\sbml\packages\layout\extension\LayoutExtension.h
base\sbml\packages\layout\extension\LayoutModelPlugin.cpp
base\sbml\packages\layout\extension\LayoutModelPlugin.h
base\sbml\packages\layout\extension\LayoutSBMLDocumentPlugin.cpp
base\sbml\packages\layout\extension\LayoutSBMLDocumentPlugin.h
base\sbml\packages\layout\extension\LayoutSpeciesReferencePlugin.cpp
base\sbml\packages\layout\extension\LayoutSpeciesReferencePlugin.h
base\sbml\packages\layout\sbml\BoundingBox.cpp
base\sbml\packages\layout\sbml\BoundingBox.h
base\sbml\packages\layout\sbml\CompartmentGlyph.cpp
base\sbml\packages\layout\sbml\CompartmentGlyph.h
base\sbml\packages\layout\sbml\CubicBezier.cpp
base\sbml\packages\layout\sbml\CubicBezier.h
base\sbml\packages\layout\sbml\Curve.cpp
base\sbml\packages\layout\sbml\Curve.h
base\sbml\packages\layout\sbml\Dimensions.cpp
base\sbml\packages\layout\sbml\Dimensions.h
base\sbml\packages\layout\sbml\GeneralGlyph.cpp
base\sbml\packages\layout\sbml\GeneralGlyph.h
base\sbml\packages\layout\sbml\GraphicalObject.cpp
base\sbml\packages\layout\sbml\GraphicalObject.h
base\sbml\packages\layout\sbml\Layout.cpp
base\sbml\packages\layout\sbml\Layout.h
base\sbml\packages\layout\sbml\LineSegment.cpp
base\sbml\packages\layout\sbml\LineSegment.h
base\sbml\packages\layout\sbml\Point.cpp
base\sbml\packages\layout\sbml\Point.h
base\sbml\packages\layout\sbml\ReactionGlyph.cpp
base\sbml\packages\layout\sbml\ReactionGlyph.h
base\sbml\packages\layout\sbml\ReferenceGlyph.cpp
base\sbml\packages\layout\sbml\ReferenceGlyph.h
base\sbml\packages\layout\sbml\SpeciesGlyph.cpp
base\sbml\packages\layout\sbml\SpeciesGlyph.h
base\sbml\packages\layout\sbml\SpeciesReferenceGlyph.cpp
base\sbml\packages\layout\sbml\SpeciesReferenceGlyph.h
base\sbml\packages\layout\sbml\SpeciesReferenceRole.h
base\sbml\packages\layout\sbml\TextGlyph.cpp
base\sbml\packages\layout\sbml\TextGlyph.h
base\sbml\packages\layout\util\LayoutAnnotation.cpp
base\sbml\packages\layout\util\LayoutAnnotation.h
base\sbml\packages\layout\util\LayoutUtilities.cpp
base\sbml\packages\layout\util\LayoutUtilities.h
base\sbml\packages\layout\validator\LayoutConsistencyValidator.cpp
base\sbml\packages\layout\validator\LayoutConsistencyValidator.h
base\sbml\packages\layout\validator\LayoutIdentifierConsistencyValidator.cpp
base\sbml\packages\layout\validator\LayoutIdentifierConsistencyValidator.h
base\sbml\packages\layout\validator\LayoutSBMLError.h
base\sbml\packages\layout\validator\LayoutSBMLErrorTable.h
base\sbml\packages\layout\validator\LayoutValidator.cpp
base\sbml\packages\layout\validator\LayoutValidator.h
base\sbml\packages\layout\validator\constraints\LayoutConsistencyConstraints.cpp
base\sbml\packages\layout\validator\constraints\LayoutConsistencyConstraintsDeclared.cxx
base\sbml\packages\layout\validator\constraints\LayoutIdentifierConsistencyConstraints.cpp
base\sbml\packages\layout\validator\constraints\LayoutIdentifierConsistencyConstraintsDeclared.cxx
base\sbml\packages\layout\validator\constraints\UniqueIdsLayout.cpp
base\sbml\packages\layout\validator\constraints\UniqueIdsLayout.h
base\sbml\packages\qual\common\QualExtensionTypes.h
base\sbml\packages\qual\common\qualfwd.h
base\sbml\packages\qual\extension\QualExtension.cpp
base\sbml\packages\qual\extension\QualExtension.h
base\sbml\packages\qual\extension\QualModelPlugin.cpp
base\sbml\packages\qual\extension\QualModelPlugin.h
base\sbml\packages\qual\extension\QualSBMLDocumentPlugin.cpp
base\sbml\packages\qual\extension\QualSBMLDocumentPlugin.h
base\sbml\packages\qual\sbml\DefaultTerm.cpp
base\sbml\packages\qual\sbml\DefaultTerm.h
base\sbml\packages\qual\sbml\FunctionTerm.cpp
base\sbml\packages\qual\sbml\FunctionTerm.h
base\sbml\packages\qual\sbml\Input.cpp
base\sbml\packages\qual\sbml\Input.h
base\sbml\packages\qual\sbml\Output.cpp
base\sbml\packages\qual\sbml\Output.h
base\sbml\packages\qual\sbml\QualitativeSpecies.cpp
base\sbml\packages\qual\sbml\QualitativeSpecies.h
base\sbml\packages\qual\sbml\Transition.cpp
base\sbml\packages\qual\sbml\Transition.h
base\sbml\packages\qual\validator\QualConsistencyValidator.cpp
base\sbml\packages\qual\validator\QualConsistencyValidator.h
base\sbml\packages\qual\validator\QualIdentifierConsistencyValidator.cpp
base\sbml\packages\qual\validator\QualIdentifierConsistencyValidator.h
base\sbml\packages\qual\validator\QualMathConsistencyValidator.cpp
base\sbml\packages\qual\validator\QualMathConsistencyValidator.h
base\sbml\packages\qual\validator\QualSBMLError.h
base\sbml\packages\qual\validator\QualSBMLErrorTable.h
base\sbml\packages\qual\validator\QualValidator.cpp
base\sbml\packages\qual\validator\QualValidator.h
base\sbml\packages\qual\validator\constraints\QSAssignedOnce.cpp
base\sbml\packages\qual\validator\constraints\QSAssignedOnce.h
base\sbml\packages\qual\validator\constraints\QualCSymbolMathCheck.cpp
base\sbml\packages\qual\validator\constraints\QualCSymbolMathCheck.h
base\sbml\packages\qual\validator\constraints\QualConsistencyConstraints.cpp
base\sbml\packages\qual\validator\constraints\QualConsistencyConstraintsDeclared.cxx
base\sbml\packages\qual\validator\constraints\QualIdentifierConsistencyConstraints.cpp
base\sbml\packages\qual\validator\constraints\QualIdentifierConsistencyConstraintsDeclared.cxx
base\sbml\packages\qual\validator\constraints\QualMathConsistencyConstraints.cpp
base\sbml\packages\qual\validator\constraints\QualMathConsistencyConstraintsDeclared.cxx
base\sbml\packages\qual\validator\constraints\QualUniqueModelWideIds.cpp
base\sbml\packages\qual\validator\constraints\QualUniqueModelWideIds.h
base\sbml\packages\qual\validator\constraints\ResultBecomesNegative.cpp
base\sbml\packages\qual\validator\constraints\ResultBecomesNegative.h
base\sbml\packages\qual\validator\constraints\ResultExceedsMaximum.cpp
base\sbml\packages\qual\validator\constraints\ResultExceedsMaximum.h
base\sbml\units\FormulaUnitsData.cpp
base\sbml\units\FormulaUnitsData.h
base\sbml\units\UnitFormulaFormatter.cpp
base\sbml\units\UnitFormulaFormatter.h
base\sbml\units\UnitKindList.cpp
base\sbml\units\UnitKindList.h
base\sbml\util\ElementFilter.cpp
base\sbml\util\ElementFilter.h
base\sbml\util\IdFilter.cpp
base\sbml\util\IdFilter.h
base\sbml\util\IdList.cpp
base\sbml\util\IdList.h
base\sbml\util\IdentifierTransformer.cpp
base\sbml\util\IdentifierTransformer.h
base\sbml\util\List.cpp
base\sbml\util\List.h
base\sbml\util\MetaIdFilter.cpp
base\sbml\util\MetaIdFilter.h
base\sbml\util\PrefixTransformer.cpp
base\sbml\util\PrefixTransformer.h
base\sbml\util\Stack.h
base\sbml\util\StringBuffer.h
base\sbml\util\memory.h
base\sbml\util\util.cpp
base\sbml\util\util.h
base\sbml\validator\ConsistencyValidator.cpp
base\sbml\validator\ConsistencyValidator.h
base\sbml\validator\ConstraintMacros.h
base\sbml\validator\IdentifierConsistencyValidator.cpp
base\sbml\validator\IdentifierConsistencyValidator.h
base\sbml\validator\InternalConsistencyValidator.cpp
base\sbml\validator\InternalConsistencyValidator.h
base\sbml\validator\L1CompatibilityValidator.cpp
base\sbml\validator\L1CompatibilityValidator.h
base\sbml\validator\L2v1CompatibilityValidator.cpp
base\sbml\validator\L2v1CompatibilityValidator.h
base\sbml\validator\L2v2CompatibilityValidator.cpp
base\sbml\validator\L2v2CompatibilityValidator.h
base\sbml\validator\L2v3CompatibilityValidator.cpp
base\sbml\validator\L2v3CompatibilityValidator.h
base\sbml\validator\L2v4CompatibilityValidator.cpp
base\sbml\validator\L2v4CompatibilityValidator.h
base\sbml\validator\L3v1CompatibilityValidator.cpp
base\sbml\validator\L3v1CompatibilityValidator.h
base\sbml\validator\MathMLConsistencyValidator.cpp
base\sbml\validator\MathMLConsistencyValidator.h
base\sbml\validator\ModelingPracticeValidator.cpp
base\sbml\validator\ModelingPracticeValidator.h
base\sbml\validator\OverdeterminedValidator.cpp
base\sbml\validator\OverdeterminedValidator.h
base\sbml\validator\SBMLExternalValidator.cpp
base\sbml\validator\SBMLExternalValidator.h
base\sbml\validator\SBMLInternalValidator.cpp
base\sbml\validator\SBMLInternalValidator.h
base\sbml\validator\SBMLValidator.cpp
base\sbml\validator\SBMLValidator.h
base\sbml\validator\SBOConsistencyValidator.cpp
base\sbml\validator\SBOConsistencyValidator.h
base\sbml\validator\StrictUnitConsistencyValidator.cpp
base\sbml\validator\StrictUnitConsistencyValidator.h
base\sbml\validator\UnitConsistencyValidator.cpp
base\sbml\validator\UnitConsistencyValidator.h
base\sbml\validator\VConstraint.cpp
base\sbml\validator\VConstraint.h
base\sbml\validator\Validator.cpp
base\sbml\validator\Validator.h
base\sbml\validator\constraints\ArgumentsUnitsCheck.cpp
base\sbml\validator\constraints\ArgumentsUnitsCheck.h
base\sbml\validator\constraints\ArgumentsUnitsCheckWarnings.cpp
base\sbml\validator\constraints\ArgumentsUnitsCheckWarnings.h
base\sbml\validator\constraints\AssignmentCycles.cpp
base\sbml\validator\constraints\AssignmentCycles.h
base\sbml\validator\constraints\AssignmentRuleOrdering.cpp
base\sbml\validator\constraints\AssignmentRuleOrdering.h
base\sbml\validator\constraints\CiElementMathCheck.cpp
base\sbml\validator\constraints\CiElementMathCheck.h
base\sbml\validator\constraints\CiElementNot0DComp.cpp
base\sbml\validator\constraints\CiElementNot0DComp.h
base\sbml\validator\constraints\CompartmentOutsideCycles.cpp
base\sbml\validator\constraints\CompartmentOutsideCycles.h
base\sbml\validator\constraints\ConsistencyConstraints.cpp
base\sbml\validator\constraints\ConsistencyConstraintsDeclared.cxx
base\sbml\validator\constraints\DuplicateTopLevelAnnotation.cpp
base\sbml\validator\constraints\DuplicateTopLevelAnnotation.h
base\sbml\validator\constraints\EqualityArgsMathCheck.cpp
base\sbml\validator\constraints\EqualityArgsMathCheck.h
base\sbml\validator\constraints\ExponentUnitsCheck.cpp
base\sbml\validator\constraints\ExponentUnitsCheck.h
base\sbml\validator\constraints\FunctionApplyMathCheck.cpp
base\sbml\validator\constraints\FunctionApplyMathCheck.h
base\sbml\validator\constraints\FunctionDefinitionRecursion.cpp
base\sbml\validator\constraints\FunctionDefinitionRecursion.h
base\sbml\validator\constraints\FunctionDefinitionVars.cpp
base\sbml\validator\constraints\FunctionDefinitionVars.h
base\sbml\validator\constraints\FunctionNoArgsMathCheck.cpp
base\sbml\validator\constraints\FunctionNoArgsMathCheck.h
base\sbml\validator\constraints\FunctionReferredToExists.cpp
base\sbml\validator\constraints\FunctionReferredToExists.h
base\sbml\validator\constraints\IdBase.cpp
base\sbml\validator\constraints\IdBase.h
base\sbml\validator\constraints\IdentifierConsistencyConstraints.cpp
base\sbml\validator\constraints\IdentifierConsistencyConstraintsDeclared.cxx
base\sbml\validator\constraints\InternalConsistencyConstraints.cpp
base\sbml\validator\constraints\InternalConsistencyConstraintsDeclared.cxx
base\sbml\validator\constraints\KineticLawUnitsCheck.cpp
base\sbml\validator\constraints\KineticLawUnitsCheck.h
base\sbml\validator\constraints\KineticLawVars.cpp
base\sbml\validator\constraints\KineticLawVars.h
base\sbml\validator\constraints\L1CompatibilityConstraints.cpp
base\sbml\validator\constraints\L1CompatibilityConstraintsDeclared.cxx
base\sbml\validator\constraints\L2v1CompatibilityConstraints.cpp
base\sbml\validator\constraints\L2v1CompatibilityConstraintsDeclared.cxx
base\sbml\validator\constraints\L2v2CompatibilityConstraints.cpp
base\sbml\validator\constraints\L2v2CompatibilityConstraintsDeclared.cxx
base\sbml\validator\constraints\L2v3CompatibilityConstraints.cpp
base\sbml\validator\constraints\L2v3CompatibilityConstraintsDeclared.cxx
base\sbml\validator\constraints\L2v4CompatibilityConstraints.cpp
base\sbml\validator\constraints\L2v4CompatibilityConstraintsDeclared.cxx
base\sbml\validator\constraints\L3v1CompatibilityConstraints.cpp
base\sbml\validator\constraints\L3v1CompatibilityConstraintsDeclared.cxx
base\sbml\validator\constraints\LambdaMathCheck.cpp
base\sbml\validator\constraints\LambdaMathCheck.h
base\sbml\validator\constraints\LocalParameterMathCheck.cpp
base\sbml\validator\constraints\LocalParameterMathCheck.h
base\sbml\validator\constraints\LocalParameterShadowsIdInModel.cpp
base\sbml\validator\constraints\LocalParameterShadowsIdInModel.h
base\sbml\validator\constraints\LogicalArgsMathCheck.cpp
base\sbml\validator\constraints\LogicalArgsMathCheck.h
base\sbml\validator\constraints\MathMLBase.cpp
base\sbml\validator\constraints\MathMLBase.h
base\sbml\validator\constraints\MathMLConsistencyConstraints.cpp
base\sbml\validator\constraints\MathMLConsistencyConstraintsDeclared.cxx
base\sbml\validator\constraints\ModelingPracticeConstraints.cpp
base\sbml\validator\constraints\ModelingPracticeConstraintsDeclared.cxx
base\sbml\validator\constraints\NumberArgsMathCheck.cpp
base\sbml\validator\constraints\NumberArgsMathCheck.h
base\sbml\validator\constraints\NumericArgsMathCheck.cpp
base\sbml\validator\constraints\NumericArgsMathCheck.h
base\sbml\validator\constraints\NumericReturnMathCheck.cpp
base\sbml\validator\constraints\NumericReturnMathCheck.h
base\sbml\validator\constraints\OverDeterminedCheck.cpp
base\sbml\validator\constraints\OverDeterminedCheck.h
base\sbml\validator\constraints\OverdeterminedConstraints.cpp
base\sbml\validator\constraints\OverdeterminedConstraintsDeclared.cxx
base\sbml\validator\constraints\PieceBooleanMathCheck.cpp
base\sbml\validator\constraints\PieceBooleanMathCheck.h
base\sbml\validator\constraints\PiecewiseValueMathCheck.cpp
base\sbml\validator\constraints\PiecewiseValueMathCheck.h
base\sbml\validator\constraints\PowerUnitsCheck.cpp
base\sbml\validator\constraints\PowerUnitsCheck.h
base\sbml\validator\constraints\SBOConsistencyConstraints.cpp
base\sbml\validator\constraints\SBOConsistencyConstraintsDeclared.cxx
base\sbml\validator\constraints\SpeciesReactionOrRule.cpp
base\sbml\validator\constraints\SpeciesReactionOrRule.h
base\sbml\validator\constraints\StoichiometryMathVars.cpp
base\sbml\validator\constraints\StoichiometryMathVars.h
base\sbml\validator\constraints\StrictUnitConsistencyConstraints.cpp
base\sbml\validator\constraints\StrictUnitConsistencyConstraintsDeclared.cxx
base\sbml\validator\constraints\UniqueIdBase.cpp
base\sbml\validator\constraints\UniqueIdBase.h
base\sbml\validator\constraints\UniqueIdsForUnitDefinitions.cpp
base\sbml\validator\constraints\UniqueIdsForUnitDefinitions.h
base\sbml\validator\constraints\UniqueIdsInKineticLaw.cpp
base\sbml\validator\constraints\UniqueIdsInKineticLaw.h
base\sbml\validator\constraints\UniqueIdsInModel.cpp
base\sbml\validator\constraints\UniqueIdsInModel.h
base\sbml\validator\constraints\UniqueMetaId.cpp
base\sbml\validator\constraints\UniqueMetaId.h
base\sbml\validator\constraints\UniqueSpeciesTypesInCompartment.cpp
base\sbml\validator\constraints\UniqueSpeciesTypesInCompartment.h
base\sbml\validator\constraints\UniqueSymbolsInInitialAssignments.cpp
base\sbml\validator\constraints\UniqueSymbolsInInitialAssignments.h
base\sbml\validator\constraints\UniqueVarsInEventAssignments.cpp
base\sbml\validator\constraints\UniqueVarsInEventAssignments.h
base\sbml\validator\constraints\UniqueVarsInEventsAndRules.cpp
base\sbml\validator\constraints\UniqueVarsInEventsAndRules.h
base\sbml\validator\constraints\UniqueVarsInInitialAssignmentsAndRules.cpp
base\sbml\validator\constraints\UniqueVarsInInitialAssignmentsAndRules.h
base\sbml\validator\constraints\UniqueVarsInRules.cpp
base\sbml\validator\constraints\UniqueVarsInRules.h
base\sbml\validator\constraints\UnitConsistencyConstraints.cpp
base\sbml\validator\constraints\UnitConsistencyConstraintsDeclared.cxx
base\sbml\validator\constraints\UnitsBase.cpp
base\sbml\validator\constraints\UnitsBase.h
base\sbml\validator\constraints\ValidCnUnitsValue.cpp
base\sbml\validator\constraints\ValidCnUnitsValue.h
base\sbml\xml\LibXMLAttributes.cpp
base\sbml\xml\LibXMLAttributes.h
base\sbml\xml\LibXMLHandler.cpp
base\sbml\xml\LibXMLHandler.h
base\sbml\xml\LibXMLNamespaces.cpp
base\sbml\xml\LibXMLNamespaces.h
base\sbml\xml\LibXMLParser.cpp
base\sbml\xml\LibXMLParser.h
base\sbml\xml\LibXMLTranscode.cpp
base\sbml\xml\LibXMLTranscode.h
base\sbml\xml\XMLAttributes.cpp
base\sbml\xml\XMLAttributes.h
base\sbml\xml\XMLBuffer.cpp
base\sbml\xml\XMLBuffer.h
base\sbml\xml\XMLConstructorException.cpp
base\sbml\xml\XMLConstructorException.h
base\sbml\xml\XMLError.cpp
base\sbml\xml\XMLError.h
base\sbml\xml\XMLErrorLog.cpp
base\sbml\xml\XMLErrorLog.h
base\sbml\xml\XMLExtern.h
base\sbml\xml\XMLFileBuffer.cpp
base\sbml\xml\XMLFileBuffer.h
base\sbml\xml\XMLHandler.cpp
base\sbml\xml\XMLHandler.h
base\sbml\xml\XMLInputStream.cpp
base\sbml\xml\XMLInputStream.h
base\sbml\xml\XMLLogOverride.cpp
base\sbml\xml\XMLLogOverride.h
base\sbml\xml\XMLMemoryBuffer.cpp
base\sbml\xml\XMLMemoryBuffer.h
base\sbml\xml\XMLNamespaces.cpp
base\sbml\xml\XMLNamespaces.h
base\sbml\xml\XMLNode.cpp
base\sbml\xml\XMLNode.h
base\sbml\xml\XMLOutputStream.cpp
base\sbml\xml\XMLOutputStream.h
base\sbml\xml\XMLParser.cpp
base\sbml\xml\XMLParser.h
base\sbml\xml\XMLToken.cpp
base\sbml\xml\XMLToken.h
base\sbml\xml\XMLTokenizer.cpp
base\sbml\xml\XMLTokenizer.h
base\sbml\xml\XMLTriple.cpp
base\sbml\xml\XMLTriple.h
libsbml\__init__.py
script\libsbml2.py
script\libsbml3.py
swig\ListWrapper.h
swig\OStream.cpp
swig\OStream.h
swig\comp-package.h
swig\fbc-package.h
swig\layout-package.h
swig\libsbml-packages.h
swig\libsbml.h
swig\qual-package.h
