Metadata-Version: 1.1
Name: seqPlot
Version: 0.1.0
Summary: Visualize (multiple) sequence alignment (MSA) with colored boxes
Home-page: https://pypi.python.org/pypi/seqPlot/
Author: Janina Mass
Author-email: janina.mass@hhu.de
License: GPLv3
Description: SeqPlot
        =======
        
        Plot overview of Multiple Sequence Alignments (MSA) using colored boxes
        
        
            ######################################
            # seqPlot.py
            ######################################
            usage:
                seqPlot.py -f multifasta alignment
            options:
                 -f, --fasta=FILE    multifasta alignment (eg. "align.fas")
        
               [ -o, --outfile=STR   output file (png) ]
               [ -c, --colorscheme=STR STR in ("default", "clustal", "lesk",
                                               "cinema", "maeditor", "dna",
                                               "aacid") ]
               [ -x, --boxwidth=INT draw INT pixels per residue (x direction) ]
               [ -y, --boxheight=INT draw INT pixels per residue (y direction) ]
        
            adding identifiers:
               [ -s, --show_names    also draw sequence ids ]
               [ -F, --font_file=FONT path to truetype font (monospace fonts recommended) ]
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 2.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
